BAC Information

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BAC

Clone NameMSMg01-210D15
Chromosome3 (Build37)
Map Location 7,444,850 - 7,445,162
singlet/doubletsinglet
Overlap genePkia
Upstream geneLOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801
Downstream geneLOC667807, 3110050N22Rik, Il7, LOC620822, LOC633072, LOC545500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210D15.T7 (MSMg01no210_d15.b1)MSMg01-210D15.TJ (MSMg01no210_d15.g1)
ACCAG392424AG392425
length795967
length of high quality
(start - end)
318 (100 - 417)---
definitionCHROMAT_FILE: MSMg01no210_d15.b1 PHD_FILE: MSMg01no210_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:40 2005CHROMAT_FILE: MSMg01no210_d15.g1 PHD_FILE: MSMg01no210_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGTCGCGTTGCTCGGGTGGGGGACGCTTCCCTTCNNCCCCNNNNNNNC
CAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTTAGAAGTTTGCTGCCCAACAGTTACATTTTTTTCGTAT
TCCTCTGAGAAGAGATAAAAATGTCATTTTATTCTACATTGGATCCTTGA
TGTCACATTTAAGGAAGACTCAGTGGTAGGGTGTGAACAGTGGGCTACTA
TGTCAGTATTTCCTGAAAAATAAAGGTCATGATTTTCTGTTATAGAGCAG
AAAGCATTTCTGTGAATTCAGGATGAATATGTACTAACATAAAATGTTCT
TAGTTTAAAAAAGTTAAGCTCAACAAATTCTACAGCTTCTCATTCATTGT
TAATGTGTTAAAATGGTATTATTTTGTCGCCCCCCCCCACTAAATAAAAA
GCAAGAATATTTGTTCACATACACCCCACGAACATAGAATGTAAATTTAC
AGTTTACATGTCTTAAATAAATTCAAAATAAGCTATAATTGAGTATTAAA
ACAACAACAACAACAACAAAAAAAGGTAGGCTCAACCACATGTGTCTTTG
TCCCAAAGACATGTGTACAAACCCAAGAAAGGCTAGTCTATTTAGTAACT
TAAATTCTTTCTGTGTAAAATGCAAGCTGACTGAGTGTATTATCTATAGT
TTTCCATACAGAGAAACACACTGTGCAATTAGCTTAAACTTTATGAAATG
TGGATTCTCAATTCTGTCGACAAACATGGCCTCTATATATTTTCT
ACCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATNAACTNNAAAAATG
AGAGTTCGTCCCAGCAAGTCCTTANNTTTGAAGATTATTCGCCCCGCATC
GCCGCGGGCGGGNCCCCNNCCCCCCCNNCCCCNNNCCCCCCCCCCCCCCN
NNCCCCNCCCCCCCCCCCCCCCCCCCCCNNCCCNCCCCCCCNCCCCCCCC
CCCCNNNCCCCCCCCCCCNCCCCCNNCCCCCNCCCCNCNNCNNNNNNCCC
CCCCCCCCCCCCCCCCCCCCCNCCCNCCCCCCCCCNNCCCCCCCCCCCCC
CCCCCCNNCNCCCCNNNCCCCCCCCCNCCCTTTTCTTTTCCNCTCCTTTC
CTCCCCTCCCCCCCCNCCCCNNNCNCTTTTTTTTTTTNGTCCCCNNNNNC
CCCNNNNNCCCCTNTTTTTTTTTTTGGGTTTTTTGTGTTTTTTTTTTGTC
CCCCCCCCCCCCTCACAAAAAAAAAACAATGTCCCTTCCCCCTCTCCTCT
CGCCCTCTCTTCCCCTCTTTTCCTTCTCCCCCCCCCTCTCCCTCTCCCCC
CTCTCCGCCCCCTCTCCCCCTCTTTTTCTCCCCCTCTCCCCCCTCCTCCC
TCCCTTGCCTTTCCCCCTTTCTCTCTCTTTTCCCTTCCTCCCCCCTTCCT
CTTCTTCTCTTTTCTCTCCCCCCTTTTCCCTCCCTCCCCTTTTCTATACT
CCTTTCCTCCCCTTCTCCCTCCACTCCCTCTTCCCTCCCCTCTTCCCCCC
CCTCCCCCCCTCCCTTTCCCCTCCCTCTCTTTTCTCCCCCCTCCCATCTT
CTCCTCCCTCTTTACCTCCTATTCCCCCCCATCTCCCCTGCTTACCCTCC
CCCCTCCCACCCTCTTCTCCTTCTCTCTCTCTCCTCCTCCCTTCTCCCTC
CCCCTTTCCTTCTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_d15.b1 MSMg01no210_d15.b1 CHROMAT_FILE:
MSMg01no210_d15.b1 PHD_FILE: MSMg01no210_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:40 2005
         (318 letters)



>mm_chr3_7444646_7445363
          Length = 718

 Score =  605 bits (313), Expect = e-178
 Identities = 313/313 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttagaagtttgctgcccaacagttacatttttttcgtattcctctgagaaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcatttagaagtttgctgcccaacagttacatttttttcgtattcctctgagaaga 458

                                                                       
Query: 65  gataaaaatgtcattttattctacattggatccttgatgtcacatttaaggaagactcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gataaaaatgtcattttattctacattggatccttgatgtcacatttaaggaagactcag 398

                                                                       
Query: 125 tggtagggtgtgaacagtgggctactatgtcagtatttcctgaaaaataaaggtcatgat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tggtagggtgtgaacagtgggctactatgtcagtatttcctgaaaaataaaggtcatgat 338

                                                                       
Query: 185 tttctgttatagagcagaaagcatttctgtgaattcaggatgaatatgtactaacataaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tttctgttatagagcagaaagcatttctgtgaattcaggatgaatatgtactaacataaa 278

                                                                       
Query: 245 atgttcttagtttaaaaaagttaagctcaacaaattctacagcttctcattcattgttaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 atgttcttagtttaaaaaagttaagctcaacaaattctacagcttctcattcattgttaa 218

                        
Query: 305 tgtgttaaaatgg 317
           |||||||||||||
Sbjct: 217 tgtgttaaaatgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)