BAC Information

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BAC

Clone NameMSMg01-211F16
Chromosome3 (Build37)
Map Location 27,324,855 - 27,325,059
singlet/doubletsinglet
Overlap geneFndc3b
Upstream geneSpata16, LOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr
Downstream geneE030011K20Rik, Pld1, Tnik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211F16.T7 (MSMg01no211_f16.b1)MSMg01-211F16.TJ (MSMg01no211_f16.g1)
ACCAG393110AG393111
length811813
length of high quality
(start - end)
208 (98 - 305)81 (128 - 208)
definitionCHROMAT_FILE: MSMg01no211_f16.b1 PHD_FILE: MSMg01no211_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:25 2005CHROMAT_FILE: MSMg01no211_f16.g1 PHD_FILE: MSMg01no211_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCCCCCTTTCTTTTTTTTTCCTCTCTTTTTTTGCCGCCNNNNNNNT
CTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGTGAAATCTTCTGGGAGACGGTACCACCGATGAGAGGCGAC
CCTGTGAGCTACGTTCTACAGGTGCTGGTTGGAAGAGACTCTGAGTACAA
GCAGGTAAGGACCAGTGTCTGCCCATGAGTGGCTCCCTGCTGCTTGCCTC
AAGCACAGCCATGAGCAGTGGAGTAAGCTGCATGTCTGTTAGCTCATCAG
TCACCCTGCCAGCCAGCCAACGGCTGAGGCAACAGCTCGCATCACCATTG
GCCTTACATTTCCTATCTGGTGTTGGTCTGGTCTTCCTAGCTTTTCAATT
CCCAAGCATACTTAATATTTCCACCTACAGCCCCCGCATTTGTGTTTAAT
GGTGTCACGTCTGCCCGTGGCGTTTTTTGAGAAATTGAAAAAGGAAGTGA
TTCCAGACAAGAATGCATCTTATCCTATTTATTTAGCCCTGTGTTCTCTC
TGCCTTTGTGATATAATTGACCCACGACTACGTCTTCCCCCATTTATGCC
CCGCCCCTTTTATCCCTCCTTTTTTCCCCTTTTTTTCCCCCGTCCACTTT
TTTTTGCCTTTTTTGCCAGTTTTAACTTCTTTTTTCCCCCTTTCCTTTAT
TTTTTTTCCCGTCTTTTCATCCCCCCATCGCCCGTTATCCCTCCTCTTTC
CCCCCTTTTATTTTTTCGCCCCACTTCAAAACAACACATCTTTTCCCTTT
TTTCCCATTTA
TCCCTCCTTCTCCTTTCCTTTCATTTTTGGCTCTTTTCTCATTCCTTTCC
TACTATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCGTGTGAACATCTCTGATATCAG
AACATCCCAGGCTCAGGGGGGAACTTCCAAAGCAGTCCTACATTCTTATG
TCCATGAAGAAGGAATAGAGCACAGGTTCACAAGTCCAGGAGAAGTAAGG
CTGGATTATTAAGAGAAGACACACTTCTAAAGGAGGAAGCAGTAAGGAGC
AAACAAGAGTTTAGGAGCTCAAATTGCCCTACCACACAAAGATGAGGATT
TTATGCCGTACAATGCCAGTGGTTTGTATATGCAGAGCATAGGTTTTTTC
ACTCATTCGCGTGTTTTTTTTTTCCCCCCCACTGCCCTACCTGTTACCTG
AGGTTCTCATATCCAAGCTTACCCCTTTCAAGGATAATTAGCACGCGTTA
GCGGGACTCAAACCCGAAATTAATCAGTTGGGCAGTGTGTGCAAGTCCAT
GTACCATGCTGGTTCTAGGAGCCTATAAAGGCCTCTCGAGGACCGGCGCT
TCACCAAAGCCGAAGTTATTTGACTGCCCTGAGCCTGTCTGATATAGCCC
TCTGTCTAATCGACCCCTAGGTATCTCCGCCATTATTCTCCCTTTTTGTT
TCGCCTATCCTCCGTTCCCATGATTTGCCTCTCCCCCCTATGTTTACCCC
TTTATCTACTCCTCTAACTCCCTTTTTATTTGTCCCCCCGCATCCACCTT
TTCCTATCACGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_f16.b1 MSMg01no211_f16.b1 CHROMAT_FILE:
MSMg01no211_f16.b1 PHD_FILE: MSMg01no211_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:25 2005
         (208 letters)



>mm_chr3_27324652_27325259
          Length = 608

 Score =  397 bits (205), Expect = e-115
 Identities = 205/205 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctgtgaaatcttctgggagacggtaccaccgatgagaggcgaccctgtgagct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ggaattcctgtgaaatcttctgggagacggtaccaccgatgagaggcgaccctgtgagct 349

                                                                       
Query: 64  acgttctacaggtgctggttggaagagactctgagtacaagcaggtaaggaccagtgtct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 acgttctacaggtgctggttggaagagactctgagtacaagcaggtaaggaccagtgtct 289

                                                                       
Query: 124 gcccatgagtggctccctgctgcttgcctcaagcacagccatgagcagtggagtaagctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gcccatgagtggctccctgctgcttgcctcaagcacagccatgagcagtggagtaagctg 229

                                    
Query: 184 catgtctgttagctcatcagtcacc 208
           |||||||||||||||||||||||||
Sbjct: 228 catgtctgttagctcatcagtcacc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space:   119201
Effective search space used:   119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)