BAC Information

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BAC

Clone NameMSMg01-212G05
Chromosome3 (Build37)
Map Location 64,408,029 - 64,408,191
singlet/doubletsinglet
Overlap gene4930518C23Rik, LOC100040918
Upstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069
Downstream gene4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212G05.T7 (MSMg01no212_g05.b1)MSMg01-212G05.TJ (MSMg01no212_g05.g1)
ACCAG393762AG393763
length712722
length of high quality
(start - end)
---163 (117 - 279)
definitionCHROMAT_FILE: MSMg01no212_g05.b1 PHD_FILE: MSMg01no212_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:08 2005CHROMAT_FILE: MSMg01no212_g05.g1 PHD_FILE: MSMg01no212_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:08 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATTTGCGGCCCTAAACNGATCACTTTCGGACGGAGGCGCGGGATACCGAG
ATGACCAAAAAAATTGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXX
ACTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAATACTTCTACAGTGTTGAAAGTGGATGCAG
CAGTATCATATGCTCATGTGATTGCTCATACCTGTACTCTCACCATGTGA
GAGGCTGACAGGAAAGCCTCAAAAGTGAGAGCTACCCAGACTATAAAATG
AGAGCCCATCACAAAAGAAAACAAACATAAGCAAAAGAATGTTTTGTCCA
CAGCAATGCTCCCGCAATGAGAAACATAAAAGAAAGTCACTGCATATGAG
TACACTGTGACTATCTTCAGACACACCATAATAGGGCATCAGATGCCATT
ATTGTTTTTTTCCCCCCCCATCCGCGGTTGTTGGTAATTGAATTAAAGAC
CTCTGGAACACCCGTCAATATTCATAACCTCTGAGACGTCTCTCTAGTCC
CATTATTGTCCTCCTTACAGATTATTTACCTACATCTGCATTTTCTCCCT
CAATTCCTGCATAGACCAATCCTGGTCCAAGGATACACTGATGGAATACA
CAAAATTCTCTATAAGAGTTTCCTTCCTCTACGCTGTGTTCTTGTTGCCT
TCTGTAGTAAAAAAACCCCCGTGCCCTGACTGTTTTTATTCCCCCAAAGA
TNATGGGGCTTCCACCCAGACTTTCTTCCCCACACTTCCCCAGTTATAAC
TTGCTTTCCAACAACTTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_g05.g1 MSMg01no212_g05.g1 CHROMAT_FILE:
MSMg01no212_g05.g1 PHD_FILE: MSMg01no212_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:08 2005
         (163 letters)



>mm_chr3_64407829_64408391
          Length = 563

 Score =  230 bits (119), Expect = 3e-65
 Identities = 152/163 (93%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgattgctcatacctgtactctcaccatgtgagaggctgacaggaaagcctcaaaagt 60
           |||||| ||||||| ||||||||| |||| |||||||||||||||||||  |||||||||
Sbjct: 363 tgtgatcgctcatatctgtactcttaccacgtgagaggctgacaggaaaatctcaaaagt 304

                                                                       
Query: 61  gagagctacccagactataaaatgagagcccatcacaaaagaaaacaaacataagcaaaa 120
           |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 303 gagagctacccagactataaaacgagagcccatcacaaacgaaaacaaacataagcaaaa 244

                                                      
Query: 121 gaatgttttgtccacagcaatgctcccgcaatgagaaacataa 163
           |||| ||||||||||||||||||| | ||||||||||||||||
Sbjct: 243 gaatattttgtccacagcaatgctgcagcaatgagaaacataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space:    86025
Effective search space used:    86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)