BAC Information

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BAC

Clone NameMSMg01-212K19
Chromosome3 (Build37)
Map Location 73,105,140 - 73,105,426
singlet/doubletsinglet
Overlap genenone
Upstream gene2010204N08Rik, Slitrk3
Downstream geneBche, LOC667425, LOC619764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212K19.T7 (MSMg01no212_k19.b1)MSMg01-212K19.TJ (MSMg01no212_k19.g1)
ACCAG393941AG393942
length715710
length of high quality
(start - end)		677 (39 - 715)287 (424 - 710)
definitionCHROMAT_FILE: MSMg01no212_k19.b1 PHD_FILE: MSMg01no212_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:30 2005CHROMAT_FILE: MSMg01no212_k19.g1 PHD_FILE: MSMg01no212_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
TTTATGACATTTCCCTCCCCACCTTCCATGCCAATGAGTTCCAGGCTCTT
TCCCATTTTCTCTTCTACTAGAGTCAGTGTAACTGGTTTTATGTTAAGTT
CCTTGATAAACTTGGACTTGAGCTTTGTTCAAGGTGACAAATATGGATCT
ATTTTTATTTTTCTACATGCAGACTTCCAGTTAGACCAGCACCACTTATT
GAAGATGCTTTCTTTTTTTCTCACTGTATATTTTTGGCTCCGTTTTGGTA
AAAGATCATTTGTCTGTAAGTGTGTGACAAAATCCTCAAGTGTCTCAAGA
AAGGAATCAAATAAGACTTCAGAAAATGGAGAGATCTCCCATGCTCATAG
ATTTATAGAATTGACATAATAAAAATGATCATCCAGATTCAATGCAATCC
CCACCAAAATTCCAACACAATTCTTAGAAGACACGGAAAGAACAATTCTC
AAATTCATCTGGAAAAAAAAACTCAGAATAGCTAAAATAATTCTTAACAA
TAAAAGAACTTCTGTGGAAATCACCATCCCTGACCTCAAGCTATACTACA
GAGAAATAGTGATTAAAATCTGCATGGTATTGGTACAGAGACTGACAGGT
TGATCAATGGAATAGAGTTGAAGTCCCAGAAATAAAATCATTCTACTCTT
TCTTTTTTTTTAATT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATGGAGGGCATTTGTCTTGTTTGGTTGGATT
GGTCACTAGGTGTATCGGTATTTTTGGGATTGGCTAGGGCTCTGGGGATA
TTCCATAACCATTGCTGAGGGAAGGCCTGGAAACTGTTGCTAGGGAGACC
TGGAAACTGTTGCTGACTCACTGCTATTGCCTCCCGCTGGGTGGCCTGGC
ACCTTCTGATGGAGCAGCCTGCTTTACTGACTTGTCTGGACTTGCCCAGT
TCTGGGAAACAGAAATTTAGGCCTAGTCTCCTGAACTGCCAGATTGAAGT
CTATTATGTACCACCCCCCCCCCAATACCCTCAAAACTAGCTCCAGTATC
CCTGGCTGCACTGATTGAATTGTTTGAGGTTTAACCACCAGAGGCTCAGT
GCGTGGCATCTTATGTGATGTTGAGTTGGACAACTTGCAGTGGTATGTTC
TCAGTGTGCTTTCAGGTATAAGACCCTATTCCTTTAGTGACAATAGTATA
GCTCTTGAGGTTGGCACTCTGGGATCCTCAGCCCTAAACAGAAACTAATG
TTTTAGTTCTTAGGCCAGACCTTGGACTTTTGGTTCTCTTGCCCAACATG
TATCTGGACATTTTCTAGCAATCTGGACTCACAAGTTGTCTTATCTTTAG
GTCTTTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_k19.g1 MSMg01no212_k19.g1 CHROMAT_FILE:
MSMg01no212_k19.g1 PHD_FILE: MSMg01no212_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:30 2005
         (287 letters)



>mm_chr3_73104940_73105626
          Length = 687

 Score =  516 bits (267), Expect = e-151
 Identities = 282/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaggtttaaccaccagaggctcagtgcgtggcatcttatgtgatgttgagttggacaa 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 487 ttgaggtttaaccaccagaggctcagtgcttggcatcttatgtgatgttgagttggacaa 428

                                                                       
Query: 61  cttgcagtggtatgttctcagtgtgctttcaggtataagaccctattcctttagtgacaa 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 427 cttgcagtggtatgttctcagtgtgctttcaggtacaagaccctattcctttagtgacag 368

                                                                       
Query: 121 tagtatagctcttgaggttggcactctgggatcctcagccctaaacagaaactaatgttt 180
           || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 taatatagctcttgaggttagcactctgggatcctcagccctaaacagaaactaatgttt 308

                                                                       
Query: 181 tagttcttaggccagaccttggacttttggttctcttgcccaacatgtatctggacattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tagttcttaggccagaccttggacttttggttctcttgcccaacatgtatctggacattt 248

                                                          
Query: 241 tctagcaatctggactcacaagttgtcttatctttaggtctttaatg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tctagcaatctggactcacaagttgtcttatctttaggtctttaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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