BAC Information

Click to search

BAC

Clone NameMSMg01-212N16
Chromosome3 (Build37)
Map Location 120,862,147 - 120,862,454
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212N16.T7 (MSMg01no212_n16.b1)MSMg01-212N16.TJ (MSMg01no212_n16.g1)
ACCAG394057AG394058
length729736
length of high quality
(start - end)
311 (47 - 357)243 (77 - 319)
definitionCHROMAT_FILE: MSMg01no212_n16.b1 PHD_FILE: MSMg01no212_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:44 2005CHROMAT_FILE: MSMg01no212_n16.g1 PHD_FILE: MSMg01no212_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTAAACACAGCCCCATCTGTCTCTGGAAGACATCCAAAAATAATC
ATTAGCTCCACATAATTCAACCCCAATGGAATACTAATCAGTTAAAAAAT
TTTCCCTTTCAAACCTCAGTTTATTGCTCATAGGAAAACGCTGAGTTTAT
TTTATGAAGAGACACACAAGGCAAAAAAGCCATGATTTACAGGTTAATCC
CCCTGCCATAAACACACATGAACAGTGCCACGCAAATGTACTTGCAATTC
ACTCTCTTTATCACCCATTTTTTATGAAATTATCAAAAAAAGGCAGTTTG
ATTTATATCAATTTCCTTCCACAATCTANCGCCAATTACGAAAATCACAA
ATCAGCCCTTATAGGTGTTCAATGAAAAAAAAACATGTATAGAGAAGGTG
TAAGGAGTCCACTCCAAGTTATTTGTGGTGAGTCACACGGAACCTGGGTG
GTGGCAGGGCCATGTGACACCGGTGACCATCTGTGACACTGAACGTGGGG
GGTTGGGGGGGTACCTACTCTTCTGATTCCGATCCACTCACGTCAGTGTA
ACATGAAGGCAGCAGGATGAACTAAAACTGGGCAGACATCCGTTCAGCCT
CCACTGACTCCGCAGCGGGCAGAGCACGCCTAGGAGACGAGAGGAAATCT
GCTCTCTTTCAGAAGTGCTTGGCTTCCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGGACAGCCATAGTTACATAAGA
GACCCTGTTAAAAACAAAAAAGCCGGGCGTGGTGGCACACGCCTTTAATT
CCAGCACTCAGGAGCCAGAGGAAGGCAGATTTCTGAGTTCAAGGCCAGCC
TGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCT
GTCTTGAAAAACCAAAACCAAAACCAAAACCAAAAAAAAACCCCATAAAC
AACAAAACAACAAAAAACAAACTAACAAAAAACAAAAACAAAAAATCAAA
ATGATTTTGTTGGTTTTATTCTAAACGTNGCCGTGTGTAAAAATACCAGT
TTTAAACATCAAGAATATGCCTGAAAAATAAATTGTATCATATTTAATAT
GTCATGGTAAGATCTCAATGCTGTGCCCATGCTATTTCCTTGTATTAAAA
GTCCCTTCCTAGAAATTAAAAAAAAAAAAATCATCACATCCTACTAATTG
CTTATACTGAGCAAAATTAGAAAATCTGGAAGAAATGGACAATTTTCTAG
ACAGATACCAGGTGCCAAAGTTAAAACAGGTTCCGATAAACCATCTAAAC
AGTCCCATAACCTCCTAAAGAAATAGAAGCAATCTTTATGTTTCCCAACC
AAAAAAATCCCAGGAACAGAGGGGTTTTAGTGCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_n16.b1 MSMg01no212_n16.b1 CHROMAT_FILE:
MSMg01no212_n16.b1 PHD_FILE: MSMg01no212_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:44 2005
         (311 letters)



>mm_chr3_120861943_120862654
          Length = 712

 Score =  565 bits (292), Expect = e-165
 Identities = 304/308 (98%), Gaps = 1/308 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaacacagccccatctgtctctggaagacatccaaaaataatcattagctcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaacacagccccatctgtctctggaagacatccaaaaataatcattagctcca 264

                                                                       
Query: 65  cataattcaaccccaatggaatactaatcagttaaaaaattttccctttcaaacctcagt 124
           |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 cataattcaatctcaatggaatactaatcagttaaaaaaatttccctttcaaacctcagt 324

                                                                       
Query: 125 ttattgctcataggaaaacgctgagtttattttatgaagagacacacaaggcaaaaaagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttattgctcataggaaaacgctgagtttattttatgaagagacacacaaggcaaaaaagc 384

                                                                       
Query: 185 catgatttacaggttaatccccc-tgccataaacacacatgaacagtgccacgcaaatgt 243
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 385 catgatttacaggttaatcccccctgccataaacacacatgaacagtgccacgcaaatgt 444

                                                                       
Query: 244 acttgcaattcactctctttatcacccattttttatgaaattatcaaaaaaaggcagttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acttgcaattcactctctttatcacccattttttatgaaattatcaaaaaaaggcagttt 504

                   
Query: 304 gatttata 311
           ||||||||
Sbjct: 505 gatttata 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 712
Length adjustment: 9
Effective length of query: 302
Effective length of database: 703
Effective search space:   212306
Effective search space used:   212306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)