BAC Information

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BAC

Clone NameMSMg01-213B21
Chromosome3 (Build37)
Map Location 74,210,861 - 74,211,180
singlet/doubletsinglet
Overlap genenone
Upstream geneBche, LOC667425, LOC619764, LOC667434
Downstream geneLOC100041551, EG667459, BC050789, Serpini2, Wdr49
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213B21.T7 (MSMg01no213_b21.b1)MSMg01-213B21.TJ (MSMg01no213_b21.g1)
ACCAG394225AG394226
length747748
length of high quality
(start - end)
323 (418 - 740)684 (65 - 748)
definitionCHROMAT_FILE: MSMg01no213_b21.b1 PHD_FILE: MSMg01no213_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:04 2005CHROMAT_FILE: MSMg01no213_b21.g1 PHD_FILE: MSMg01no213_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTGTAA
ACTCTCCATTAATATAATTTGTGCTTACTTTGTTTTCCCCCCCTGAAACT
TGAGTAATTGGGAACCTTCATTGAATATATTCATGAGCTCGTTGGACTTA
TATTCAGATACTGAACTCCAGTATAATAACAACCTATTCTTAATAATTTA
ACTCGTGCTGCTGGACCCTTCATTATTTCACATAAAATACCCACAAATGA
TGCTCCTGCTATTTAGCTATTATTAGAATAGACAATAACATTACCAAAGT
TAATACTACACAATGTAAAATATGTTGACATATAAAATTAATACTTGACC
TAAGTGATATATTAGATGATTAAATTGTTCCAGGGGTTTTTAGGGATTTT
TAAAAAAAAACCCACGGAGTGCATTTGTGTGTATGGAGCTTTACTCTAAT
GCAAATAAAAATGAAGCTAGGGTATTATAACTCATTAGCTTTTATTTAAT
ATTTTATAATAAGAAGAATTGTATACAATCTTGCTTCTTTGACTTATGTG
TAAATTACTTACTGAATTCCAGTTATGTATATATTTTTTTAATGTTGTAA
AAGTTCTTTCAAATGTTTGAGTGCTTTGTCTACATTTGTGTCTATCCACC
ATCTGTGTGCTTGGCACTCTTGGATCTCCTAAGACTTGAGTTAAAATGAT
TGTGAATAAATATGTAAGTTCTTACTTGAAAATTGAATTCAGATCCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAAGGCCCATACATAAACATGATAAAAGCAATCTACA
GCAAACCAGTAGCAAACACCAAAGTAAATGGTGAGAAGCTGGAAGCAATC
CCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTCTT
CAACATAGTACTTGAAGTCCTAGCCAGAGCAATTCGACAACAAAAGTAGA
TCAAGGGGACACAAATTGGAAAAGATGAAGTCAAAATATCACTTTTTGCA
GATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACT
CCCAAACCTGATAAACAGCTTTGGCGAAGTAGCTGGATATAAAATTAACT
CAAACAAGTCAATGGCCTTTCTCTACACAAAAAATAAACAGGCTGAGAAA
GGAATTAAGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATA
TCTTGGCGTGACTCTAACTAAGTAAGTGAAAGATCAGTATGATAAGAACT
TCAAGTCTCTGAAGAAAGAAATTAAAGATGATCTCAGAAGATGGAAAGAT
CTCCCATGCTCATGGATTGGCAGGATCAACACTGTAAAATGGCTATCTTG
CCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCA
ATTTTTCAACGAATTAGAATGAGAAATCTGCAAATTCATCTGGAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_b21.b1 MSMg01no213_b21.b1 CHROMAT_FILE:
MSMg01no213_b21.b1 PHD_FILE: MSMg01no213_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:04 2005
         (323 letters)



>mm_chr3_74210565_74211287
          Length = 723

 Score =  594 bits (307), Expect = e-174
 Identities = 318/323 (98%), Gaps = 3/323 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgcatttgtgtgtatggagctttactctaatgcaaataaaaatgaagctagggtatta 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 616 agtgcatttgtgtgtatggagctttactctaatgtaaataaaaatgaagctagggtatta 557

                                                                       
Query: 61  taactcattagcttttatttaatattttataataagaagaattgtatacaatcttgcttc 120
           |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 556 taactcattagcttttatttaatattttataat---aagaattgtatacaatcttgcttc 500

                                                                       
Query: 121 tttgacttatgtgtaaattacttactgaattccagttatgtatatatttttttaatgttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tttgacttatgtgtaaattacttactgaattccagttatgtatatatttttttaatgttg 440

                                                                       
Query: 181 taaaagttctttcaaatgtttgagtgctttgtctacatttgtgtctatccaccatctgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taaaagttctttcaaatgtttgagtgctttgtctacatttgtgtctatccaccatctgtg 380

                                                                       
Query: 241 tgcttggcactcttggatctcctaagacttgagttaaaatgattgtgaataaatatgtaa 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgcttggtactcttggatctcctaagacttgagttaaaatgattgtgaataaatatgtaa 320

                                  
Query: 301 gttcttacttgaaaattgaattc 323
           |||||||||||||||||||||||
Sbjct: 319 gttcttacttgaaaattgaattc 297


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)