BAC Information

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BAC

Clone NameMSMg01-213L20
Chromosome3 (Build37)
Map Location 23,360,058 - 23,360,360
singlet/doubletsinglet
Overlap geneLOC100039548
Upstream geneLOC675593, LOC100040378, LOC623751
Downstream geneEG635702, EG665189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213L20.T7 (MSMg01no213_l20.b1)MSMg01-213L20.TJ (MSMg01no213_l20.g1)
ACCAG394634AG394635
length731732
length of high quality
(start - end)		322 (36 - 357)303 (67 - 369)
definitionCHROMAT_FILE: MSMg01no213_l20.b1 PHD_FILE: MSMg01no213_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:51 2005CHROMAT_FILE: MSMg01no213_l20.g1 PHD_FILE: MSMg01no213_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTAGATCAGTATCCTATGCTTGATTGCATTTTTGATGTCTAGTTTCATGA
GTTCATTTTATATTTTACATATTAGTTATTTATTAGTTGGAGAGTTCTTA
ATAGCGTTCTCACGCCCGGCCAGGAAGAACACAACAGACCAGAATCTTCT
GCGGCAAAACTTTATTGCTTACATCTTCAGGAGCTAGGAGCGCAAACCCC
CAGCCCCAAAAGCGAAAGCCCCTTCAATCTTACATCTTTAGGAGCCAGAG
CTCCGGCGCGCCAAAGCGCAGAGCGCGCTCTATTGTTTACATCTTTAGGC
AGCGATATAGCGCACGGCGCGCACAGCCAGAGAGATGCCAGCGAGAGAGA
ATGGCGGAAACCCCGTCCCCTTTTTTAGGAGGAGTTATCCTTCACTTAGG
ACGCATCACTCCCTGATTGGCTGCAGCCCATGGCCGAGCTGACGTTCACG
GGAAAGGCAGAGTACAAGTAGTCGTAAAATACCCTTGGCACATGCGCAGA
TTATTTGTTTACCACTTAGAACACAGGATGTCAGCGCCATCTTATGACGG
CGAATGTGGGGGCGGCTCCCAACATCTCCCCCTTTTCTTTTAATAAGAGC
AAATAGGCCACCCATATTAATGAGAGTGGAGATAGAGGTCAAATCCCCAG
TGTGTAGGTAAAGGAGCCGTACACATAACCT

TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATATGGGTCAGCAAGTTAATATATTAAAACCTG
AATTTCTGGTGTAATCTGCAGGAGCTGAACATGGAGACAAAACCACCTGA
CAAACAGGATAGCTAAGTTATCAGTTCTCTGAAGGATGTCTTCAGTTATC
TACATGTACCTTGACCCTGGTTTTGTAGCCTGATTGACTGTGGTCTAGCT
AGAGGAGGGGTGTTGCCATAGGATGCTTACTCATGAAGACTCTTGTGATT
TTCCTCACGAAATTGGAGCTTAGCCCCTGGTCTTGCACAAAATGGAGGTT
TGCTTGTTTTTTGTTTTTCTGCTCCTGCATTATTTTCAAAAATGGTGTTG
GTTGGGCTTCACATTTCATCTTTCCTTAGGCTACATAGGAGGCCTAATAA
TGGAGCTTCCGATGGAATCAGAAGGATCGTTGCAAGCTGTTCCTCTCACC
TCCAGGTATTAATTCTATAAATTGAGATCTAAATTCCATGAGCATTGCCC
CTATTCTTTCTTTATAAACCACATTACTCTGTTTAATATGCCAGGACCAA
TCATTAATAGCAACAGTAGTATGAATAAGGTGATAAACATGGTAGAAATC
AGGGCAGTCAACCAGGGGGATCTATTAAACCCTATGTTTCAAACCATCCT
TTGGCAGCATATCTCTTTCTGTCATGTATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_l20.g1 MSMg01no213_l20.g1 CHROMAT_FILE:
MSMg01no213_l20.g1 PHD_FILE: MSMg01no213_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:51 2005
         (303 letters)



>mm_chr3_23359858_23360560
          Length = 703

 Score =  571 bits (295), Expect = e-167
 Identities = 301/303 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatgggtcagcaagttaatatattaaaacctgaatttctggtgtaatctgcaggagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catatgggtcagcaagttaatatattaaaacctgaatttctggtgtaatctgcaggagct 260

                                                                       
Query: 61  gaacatggagacaaaaccacctgacaaacaggatagctaagttatcagttctctgaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacatggagacaaaaccacctgacaaacaggatagctaagttatcagttctctgaagga 320

                                                                       
Query: 121 tgtcttcagttatctacatgtaccttgaccctggttttgtagcctgattgactgtggtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tgtcttcagttatctacatgtaccttgaccctggttttgtagcctgattgactgtagtct 380

                                                                       
Query: 181 agctagaggaggggtgttgccataggatgcttactcatgaagactcttgtgattttcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctagaggaggggtgttgccataggatgcttactcatgaagactcttgtgattttcctc 440

                                                                       
Query: 241 acgaaattggagcttagcccctggtcttgcacaaaatggaggtttgcttgttttttgttt 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 acgaaattggagcttagcccctggtcttgcacaaaatggaggtttgtttgttttttgttt 500

              
Query: 301 ttc 303
           |||
Sbjct: 501 ttc 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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