BAC Information

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BAC

Clone NameMSMg01-213M17
Chromosome3 (Build37)
Map Location 128,336,884 - 128,337,196
singlet/doubletsinglet
Overlap genenone
Upstream geneNeurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
Downstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213M17.T7 (MSMg01no213_m17.b1)MSMg01-213M17.TJ (MSMg01no213_m17.g1)
ACCAG394673AG394674
length764733
length of high quality
(start - end)
330 (35 - 364)288 (65 - 352)
definitionCHROMAT_FILE: MSMg01no213_m17.b1 PHD_FILE: MSMg01no213_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:55 2005CHROMAT_FILE: MSMg01no213_m17.g1 PHD_FILE: MSMg01no213_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCCAG
AAGAGTTCCGATATGCCGTAAAATTTGAGAACCAATAGATTGCACCATTT
GTACAGTACGAGTTGAAACAAAGGTATATAGGTGTATAAAGGGAGGCATT
TGTGTTTCTTGAATTTGTGTTAGCACAGGCATGTATAGTGATGGAGGGAT
AATCACAAATCCTTTATGTTAAATAATAGAATAACACGGCTTTTATTAGG
ATAAAGAGTTAGGACTGGATATGCAGCATTGATTTTTTGAATTCAGAATA
CTCTGCTGCAGTTATCTGGATGGAAAGGCAGTTCATGTAACTCAAGTTTT
CTTTTTTTTTATTTTACGCCGCCTCAGGTCCATTTGGACTCTGGAGAAAA
CAAGGTTAACCGACAAAGTTTCCAGCCTCACAGTTTCTTGATGCTGAGGA
GGGCTGGTAGTTTTGGGAACATTCATTGATGGGCAAGTTTACCATCTTAA
AAAACAATCTATATTTATGTGAGTTTAAAAACACATTTGATTGTTTTGTT
TGCTTGATTGTTTGTTTATTGGGTTTGTTTTTGATATTTTTATTAAACAT
ACTATATATATTTACTATTATTCTTTCATATTATTTATTTTTTTTTTATT
TTATTTTTCTTCCTCTTTTCTTATCTTCTTTCTATATCCTATCCTCTCTT
TCTTCCTCCCCTCTTCCATTATAATACATTTAATACTTTAATATACCTCG
TCCATGCTACAACC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAGTCTCCTCCTGACTGGCTACCTTCAGATCAAGAT
GCAGCAATCTCAGCAGCTCTAGCACCATGTTTGCCTGGATGCTCTCTCCA
TGGTTCCCACTATGATGATAATGGACTAAATCTCTGAAAATGTGAGACAG
TTTCAATGAAATGTCTGTTATAAGAGTGCCTTGGTCATTGTGTCTCTTCA
CAGAAATGAAAATCCTAAATAAAACACTTTGTATGGTGTAAAAGTGTCAA
CGGTTTTCCACTTAACTGCATGGATTAGAAAGCAATATTCACACAACTTC
TATTTTGTTACGCCCCTCCCCCACAATCTTCTTACCAGGGGAGAGTTGAT
CCTGGTAACACGCCTCCTTCTTAACCTTTCCTGGAACTTCAATCTTTTAA
AGAAACACTGGTCTATAGATTTAGAAAACAAATGCAAAATTAACTAAATC
TAACAGATCTTCATTTTAATTAATTAATCAAAATTAACTAAATTTAATTA
ATTAATTTTTTATTCACATCCTGATTGACAGTCCCTCCATCCACTCTTCC
CAGTCCTACCCTTACAAATCTCTTCTCCATCTTCTTCAGAGAAGGTTAGT
CCCCCTTGGGTACCACCCCACCCATGGACATCTAATCCCAGCAGGAATAA
CCACATCATCTTCCATCGTAGGCCCTACTAGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_m17.b1 MSMg01no213_m17.b1 CHROMAT_FILE:
MSMg01no213_m17.b1 PHD_FILE: MSMg01no213_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:55 2005
         (330 letters)



>mm_chr3_128336680_128337409
          Length = 730

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcccagaagagttccgatatgccgtaaaatttgagaaccaatagattgcaccat 64
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 517 gaattctcccagaagagttccgatatgccataaaatttgagaaccaatagattgcaccat 458

                                                                       
Query: 65  ttgtacagtacgagttgaaacaaaggtatataggtgtataaagggaggcatttgtgtttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttgtacagtacgagttgaaacaaaggtatataggtgtataaagggaggcatttgtgtttc 398

                                                                       
Query: 125 ttgaatttgtgttagcacaggcatgtatagtgatggagggataatcacaaatcctttatg 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 397 ttgaatttgtgttagcacaggcatgtatagtgatggtgggataatcacaaatcctttatg 338

                                                                       
Query: 185 ttaaataatagaataacacggcttttattaggataaagagttaggactggatatgcagca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttaaataatagaataacacggcttttattaggataaagagttaggactggatatgcagca 278

                                                                       
Query: 245 ttgattttttgaattcagaatactctgctgcagttatctggatggaaaggcagttcatgt 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 277 ttgattttttgaattcagaatactctactgcagttatctggatggaaaggcagttcatgt 218

                        
Query: 305 aactcaagttttc 317
           |||||||||||||
Sbjct: 217 aactcaagttttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)