BAC Information

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BAC

Clone NameMSMg01-214B01
Chromosome3 (Build37)
Map Location 128,116,061 - 128,116,744
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
Downstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214B01.T7 (MSMg01no214_b01.b1)MSMg01-214B01.TJ (MSMg01no214_b01.g1)
ACCAG394845AG394846
length732774
length of high quality
(start - end)
687 (46 - 732)89 (129 - 217)
definitionCHROMAT_FILE: MSMg01no214_b01.b1 PHD_FILE: MSMg01no214_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:16 2005CHROMAT_FILE: MSMg01no214_b01.g1 PHD_FILE: MSMg01no214_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGCCTTCTCCAACAAAAATGAATTATATAAACAGAGATTACAT
AGTGTGGGAGAATATAGAAAGGCTCCCTCTGAGTACTCTCAGCTCGCCAG
GTCTGTGTCTTTTCTATCACCAGCTGCACACACAAACACCTTATAAATCA
TATTAGGAGAACAGACTAAATGCCAGTTAGAGTTTAAAATTATGTGTCTT
ACTCTAGTCTGATTCCATATGTTCTCAGGCATATGCAAGCATTCACACAG
GCATTCATTCTGCATATATGTAGGCATGTGATATATGAGAAAGTTCACTG
TTCTATTACCAATCTAAAATGAATGGACACTTTACAAAGGTCTTGAAGAA
AATAATGTATGTCAACATGTGTGTACATATGTGAGATTTGTACATATATG
TGGTGTCACTATACTGAGTAAAAAGAGAGAAGCTTAAGATGTTATAAATG
TGATTAAAGCATTTGTAGGATAATCTAATGAATGGAAAAGTCGTATCTTG
TACCTCAGTTGGAAATTGGGTATTTTATTAATCACCTAACTTCATAATCA
TATTACCTACATTCATGTAAGTGTGTGTTTGAAAACATAAAGGAGAAGGG
TGTCTCAATGAGTTTCAGCAGTCCCACCATCTGCCAGTCACCAGTGAAAG
GCAGAAGGTTTTCATCCATCATTATGGGTCAA
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAATGGAGGGAAGGAGAGAGTGAC
GGAGAGATACAGAGAGTTGGTATACCGCAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGACCCAGCAGACCGCTGTGCACTTTGTTTGTTTTGTA
GATAGTATGTCAGTTTTATAAGGCCCTACGTGGCCCAGAGTTTCATAGAA
ACTCACACTCATTTTCTGGATTCGTTTTGTATGTCTCACCATTTAACTGC
CTTTGCCTCAAAAAGTTTTTTTTTTCCCCCCCCCCCCCCGAGCATTTGTT
ATATTCTCTATGCTGTTGCTTTCCCCCTGTTCTTTTCTGTGAATGCTTTG
ATCCTGTTGTCTCCTATCTCCTCTCATTTGTTTCTTTGTTTTTTTGTTCT
ACTTTCCTTTTTTTGTCCTTCTATTCACTCACATTTGTCTTTTTTACTCC
CCTTTCTTCCTTTCTTTTTTTCCTCCTTTTTTTTCCCCCTCTTCATCTTT
CTCTCTTTTTCTCTCTCCTTTTTCTTCTCTCCCTTATCTCTTTTTCGCCC
CCCCTACTTGTTTTTCTTTTTTTTTCTCCCCTCTCTTTTCTCCTCCCCCC
CTCCCTTCTCTTTTTTCTTTTCTCCGTTTCTCTTCGCCGTTTCTTTTCTT
CTTCTTCCCTTTTCTTTCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_b01.b1 MSMg01no214_b01.b1 CHROMAT_FILE:
MSMg01no214_b01.b1 PHD_FILE: MSMg01no214_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:16 2005
         (687 letters)



>mm_chr3_128115858_128116945
          Length = 1088

 Score = 1261 bits (652), Expect = 0.0
 Identities = 676/684 (98%), Gaps = 1/684 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactgccttctc-caacaaaaatgaattatataaacagagattacatagtgtgg 62
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 ggaattcactgccttctcaaaacaaaaatgaattatataaacagagattacatagtgtgg 828

                                                                       
Query: 63  gagaatatagaaaggctccctctgagtactctcagctcgccaggtctgtgtcttttctat 122
           ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gagaatatagaaagggtaactctgagtactctcagctcgccaggtctgtgtcttttctat 768

                                                                       
Query: 123 caccagctgcacacacaaacaccttataaatcatattaggagaacagactaaatgccagt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 caccagctgcacacacaaacaccttataaatcatattaggagaacagactaaatgccagt 708

                                                                       
Query: 183 tagagtttaaaattatgtgtcttactctagtctgattccatatgttctcaggcatatgca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tagagtttaaaattatgtgtcttactctagtctgattccatatgttctcaggcatatgca 648

                                                                       
Query: 243 agcattcacacaggcattcattctgcatatatgtaggcatgtgatatatgagaaagttca 302
           ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 647 agcatccacacaggcattcattctgcatgtatgtaggcatgtgatatatgagaaagttca 588

                                                                       
Query: 303 ctgttctattaccaatctaaaatgaatggacactttacaaaggtcttgaagaaaataatg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ctgttctattaccaatctaaaatgaatggacactttacaaaggtcttgaagaaaataatg 528

                                                                       
Query: 363 tatgtcaacatgtgtgtacatatgtgagatttgtacatatatgtggtgtcactatactga 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tatgtcaacatgtgtgtacatatgtgagatttgtacatatatgtggtgtcactatactga 468

                                                                       
Query: 423 gtaaaaagagagaagcttaagatgttataaatgtgattaaagcatttgtaggataatcta 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gtaaaaagagagaagcttaagatgttataaatgtgattaaagcatttgtaggataatcta 408

                                                                       
Query: 483 atgaatggaaaagtcgtatcttgtacctcagttggaaattgggtattttattaatcacct 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 atgaatggaaaagtcgtatcttgtacctcagttggaaattgggtattttattaatcacct 348

                                                                       
Query: 543 aacttcataatcatattacctacattcatgtaagtgtgtgtttgaaaacataaaggagaa 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aacttcataatcatattacctacattcatgtaagtgtgtgtttgaaaacataaaggagaa 288

                                                                       
Query: 603 gggtgtctcaatgagtttcagcagtcccaccatctgccagtcaccagtgaaaggcagaag 662
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gggtgtctcaatgagttttagcagtcccaccatctgccagtcaccagtgaaaggcagaag 228

                                   
Query: 663 gttttcatccatcattatgggtca 686
           ||||||||||||||||||||||||
Sbjct: 227 gttttcatccatcattatgggtca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1088
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1078
Effective search space:   729806
Effective search space used:   729806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)