Query= MSMg01no214_c23.b1 MSMg01no214_c23.b1 CHROMAT_FILE:
MSMg01no214_c23.b1 PHD_FILE: MSMg01no214_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:25 2005
(590 letters)
>mm_chr3_49728623_49729612
Length = 990
Score = 1110 bits (574), Expect = 0.0
Identities = 583/586 (99%), Gaps = 1/586 (0%)
Strand = Plus / Plus
Query: 5 gaattctctatttggtttgaaaataataaaaccccatcaatattaagcaaactgtgttaa 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctatttggcttgaaaataataaaaccccatcaatattaagcaaactgtgttaa 264
Query: 65 tttctttatcattaattccattgatttctgtttttataaacataatttaaatatgaatat 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttctttatcattaattgcattgatttctgtttttataaacataatttaaatatgaatat 324
Query: 125 ttttgaatgccataataattcatatatgtgtaaacctacaagattacaagtcaccatttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttgaatgccataataattcatatatgtgtaaacctacaagattacaagtcaccatttt 384
Query: 185 tatttcattggtgaatgctttcactggctcagtcttaataggatgagagtgatatagaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatttcattggtgaatgctttcactggctcagtcttaataggatgagagtgatatagaga 444
Query: 245 aaagtaatgagccttcaaactataaagattggacagcttaatacttttaacttagacatc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagtaatgagccttcaaactataaagattggacagcttaatacttttaacttagacatc 504
Query: 305 atctgttatggaagataatatatatagtgccaatatgatatgagattatggcccagaaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atctgttatggaagataatatatatagtgccaatatgatatgagattatggcccagaaag 564
Query: 365 gcagagaaagagaagttgaggttgtcttagaggttctgtcctcagcaccctatgaagaca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcagagaaagagaagttgaggttgtcttagaggttctgtcctcagcaccctatgaagaca 624
Query: 425 actgtgtttaacatccaagaagagaaaaagattcaaaagatatttttctctcatgtgacc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 actgtgtttaacatccaagaagagaaaaagattcaaaagatatttttctctcatgtgacc 684
Query: 485 aacactggtaactgtaactattctgaaggtttgggacataagaaagtaatcacaaaaggg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aacactggtaactgtaactattctgaaggtttgggacataagaaagtaatcacaaaaggg 744
Query: 545 gagggagggagggacatgggagggaaagtcgttgagggggggtgtg 590
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 745 gagggagggagggacatgggagggaaagtcgttgagggggg-tgtg 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no214_c23.g1 MSMg01no214_c23.g1 CHROMAT_FILE:
MSMg01no214_c23.g1 PHD_FILE: MSMg01no214_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:25 2005
(447 letters)
>mm_chr3_49873771_49874617
Length = 847
Score = 841 bits (435), Expect = 0.0
Identities = 444/447 (99%)
Strand = Plus / Minus
Query: 1 tttattttcttgatctttggtaaaattcttcatgtatccaacagtttgagcccaaaaagg 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 504 tttattttcttgatctttggtaaaattcttcatgtatccaacagtttgaggaaaaaaagg 445
Query: 61 tgtcaaatgctatgtgcaatttcttcagaaatatttcatgcctataatgccgtgatcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtcaaatgctatgtgcaatttcttcagaaatatttcatgcctataatgccgtgatcttg 385
Query: 121 gttaaggaaggtatttacttgcgtctagtttaagtctacatagaccatttctaagaacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttaaggaaggtatttacttgcgtctagtttaagtctacatagaccatttctaagaacat 325
Query: 181 ctgatttgatgcattcctactgctcatgcttctcagaaatccagtctgaaaagatgcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgatttgatgcattcctactgctcatgcttctcagaaatccagtctgaaaagatgcagt 265
Query: 241 ttggtgtaggtcttaaaatgctgtggtgtgtgctgcagtgtctatgggattttgttgctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttggtgtaggtcttaaaatgctgtggtgtgtgctgcagtgtctatgggattttgttgctc 205
Query: 301 ttgttgtttgtgtgtgttagagggggagcgagtgtctatgtgtatatgcacattacatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttgttgtttgtgtgtgttagagggggagcgagtgtctatgtgtatatgcacattacatgt 145
Query: 361 gtgttgtgtgtatatgttttatgtggagagcatatattgtgtgttgtgtgtaagtggtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gtgttgtgtgtatatgttttatgtggagagcatatattgtgtgttgtgtgtaagtggtgt 85
Query: 421 atatggagtatgtgattctgaagttta 447
|||||||||||||||||||||||||||
Sbjct: 84 atatggagtatgtgattctgaagttta 58
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space: 365769
Effective search space used: 365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
