BAC Information

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BAC

Clone NameMSMg01-214E11
Chromosome3 (Build37)
Map Location 144,882,968 - 144,883,256
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream geneCol24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214E11.T7 (MSMg01no214_e11.b1)MSMg01-214E11.TJ (MSMg01no214_e11.g1)
ACCAG394983AG394984
length732734
length of high quality
(start - end)
432 (134 - 565)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no214_e11.b1 PHD_FILE: MSMg01no214_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:33 2005CHROMAT_FILE: MSMg01no214_e11.g1 PHD_FILE: MSMg01no214_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATGAGTTCCGCTCCGTTGATTTAGGGGGTGTTGTTTTCCTTGT
GGCTCTTACACTTTCTGTTTCCCCTTCCACGTCGTTCACTGAGCTCTGAG
GGGACAGATTTGGTGGAGACACACCATTGAGAGCTGTGTGTTCTATGTCC
CCCTCACTTTTGCTGTGAGTCTCTGTGTTTGTCCCCATCTGCTTGCTGTC
AGAAGAAACTTCTCTGATGATGGCTGATAAGGCACTGGTATATGAATATA
ACAAAATATCACTGGGAGTCATTATTAGCACAGGTTTTCAAGAAAGGGGG
GAGGTATTTGGTTTTACCCTAAGTCTCTAGACTATCTAATCTCTGGTTCT
TGGTCCCCCAGGTAGCGCCGGGTATGGGTTCTATCATGTGGAATGGCCCT
TATGTCAAACCAAATGTTGGTTGGTTAATCCCACAAACTTTATGCCCTAG
CATATTTTGCAGGCATGACAGCACTGTAGATCATAGGATATACGACTGGG
TTGGTGTTTCCGTTTCTATTTTGGTAGCCTGCAGAGTATCTTTCTGCATC
TAAGACACTAGAATGTAAGGATGAAGGTTTGATGTAGGCACTACCTAGAT
TTTCCACGTTCCATGATTTGTGTGGGTGTTGTCTTCCGCAATGGGCACCT
GCTGCCATTTTGGGCGGAAGCAACCTATGGGC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAACGTTAGCAATTTCAACATGA
ATATATTGAGAACACTGTAGTTATTCCAACCATCAGCTGAGCTATTTGAT
TTGAGAACATGCCTGTTCTTAAAAAAGCAATTAGCCCTCTAATACTGTTT
TATTTATTCCTTATAAATCCACAAATACTTTATCTCTCTAGTGAACCCCA
ATCTTTTCTTGGTCCATTTAAGAAAGATAAACCTGGAGATTGCTCTGGGC
TGAATGTGAAGTGTCCACCACAGGCTCATATGTTGTAACACTTGGTCCCC
ACCAGGTGGTGCTGTCTTATGAAAGTGCACCACCCGTAAGGGAGCCTTGC
TAAGACTGGCTCTCAGGCCCGATAATGTGGACCAACTCCCTGTTCTGTTT
CTCTGCTTTCTGTGTGTGGATGGAATGTGATCATCCAGCTACCCACTTTG
CTAGCCATGTCTTCTTTGCCTGCTGCATGATGAACCATATCTACTCTGGA
GCTGTAAGCTAAAATGAATCTTATCTCTTCCAACCTGCTTTATGCCAGGG
CAACATAACACTAACTAATATACCAACATTCCTGCATAGAAAGAACATGT
GGGCCAATTTGACCATATTCCCTTATTTATGTAGTCCATTCATCAACACT
AAAGGATAATAACAGGCTTGTAATTGCCATATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_e11.g1 MSMg01no214_e11.g1 CHROMAT_FILE:
MSMg01no214_e11.g1 PHD_FILE: MSMg01no214_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:33 2005
         (289 letters)



>mm_chr3_144882843_144883531
          Length = 689

 Score =  474 bits (245), Expect = e-138
 Identities = 278/289 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataacgttagcaatttcaacatgaatatattgagaacactgtagttattccaaccatcag 60
           |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 414 ataacgttagcaatttcaacatgaatatattgagaacattgtagttatttcaaccatcag 355

                                                                       
Query: 61  ctgagctatttgatttgagaacatgcctgttcttaaaaaagcaattagccctctaatact 120
           |||||||||||||||| ||||||||||| ||||| |||||||||| || |||||||||||
Sbjct: 354 ctgagctatttgatttaagaacatgcctattctttaaaaagcaatcagtcctctaatact 295

                                                                       
Query: 121 gttttatttattccttataaatccacaaatactttatctctctagtgaaccccaatcttt 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 294 gttttatttattccttataaatccacaaatactttctctctctagtgaaccccaatcttc 235

                                                                       
Query: 181 tcttggtccatttaagaaagataaacctggagattgctctgggctgaatgtgaagtgtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 tcttggtccatttaagaaagataaacctggagattgctctgggctgaatgtgaagtgtcc 175

                                                            
Query: 241 accacaggctcatatgttgtaacacttggtccccaccaggtggtgctgt 289
           |||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 174 accacaggctcatatgttataacatttggtccccaccaggtggtgctgt 126


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)