BAC Information

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BAC

Clone NameMSMg01-214E22
Chromosome3 (Build37)
Map Location 130,936,917 - 131,000,112
singlet/doubletdoublet
Overlap geneHadh, Cyp2u1
Upstream geneCol25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568, Lef1, 6720418B01Rik
Downstream geneSgms2, LOC100043443, Papss1, Olfr375-ps1, Dkk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214E22.T7 (MSMg01no214_e22.b1)MSMg01-214E22.TJ (MSMg01no214_e22.g1)
ACCAG395000AG395001
length725725
length of high quality
(start - end)		320 (46 - 365)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no214_e22.b1 PHD_FILE: MSMg01no214_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:35 2005CHROMAT_FILE: MSMg01no214_e22.g1 PHD_FILE: MSMg01no214_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,936,917 - 130,937,232)(130,999,823 - 131,000,112)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATTTCAGTGGAAGAACCCCATGACTGCAACTAGTCAAAAGATTA
CTTCAGAGAGACTGCAAGGGAGGGCCCACTGAGCCGCCCCTGGCAAGCCT
CGGTACCACCTGCCCAGGGCTTGCTCATCCTTGTCCCATGGCTGGCTGGA
GGTGTTGCTGGGGGAAGTGTCACTTGTATTTGTAAAATCCTTCTCCGGTC
TTCTTGCCCAGCTTCTTCTGGGCCACCAGATTATTCATGGAAGGACTGGG
CTGAAATAAGGGGTTCTCTGGCTCCATTTCATGCCACCCTGTTGAGAGAA
AGGGCACAGGTTCACTTATGTTCTGCACCCTCTCAGGGCATGCCTGGGGC
ACAGAATCCATGCAGGCCAACATGGCAGAAGCACCAAGCAGGCTGCACGG
GTACAGCCAACATTGACTCTATAACAGGCTTGCTGCTAGAAGCCTAGCTC
CACTGGAGGGCTCCCTGCCACACAGGACTCCCTGCAAACCAAGGCAAAGA
CCTAAGAGCACAAACAGAAACTGAAAAGAGAGTTTTCTACATCCAAGCTA
AGTCCTAGGTTGTTCCCGTAGGTATTTTGCAGCCTCATATAATTTTAAAT
TTTCTAAGTCAACTAAAACAACCCCTTTCCTCCCCCAATATTTAAAGGTT
TTTGGTGAAATACTAGAGCAGTATA

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCTTGCTATTTCCAGCTTCTT
TGACCTGGTGGTCCTCTCTCCATCTTCAGAGCCAGCAGAGCTGTAGCCCT
CAGGCCATGCTTCCGTATTCACATCTTCTTCTGACTGAAGTCGGTTAGGC
AAGGCCATCTGATTTTAAAGCCCATGCGGCTTGGGGATGGGCGCATGTCC
TAAGAATATGTCACTAGATGGTTTTACTATGTGCAAGCGTCACAGAGTAC
ACTTAAACTGACGTAACCGTAGTGTCACTAGGCAATATAACCTCACAGGG
CCATCTTGTTGATGTGTTTTTTGTCCGCCCCACCTGTCACCATCTAGCAT
ATAACTGTGCTTGGATGGAGACGCACTCAATAGTCCAGGATATGTCCCCA
TGCTTAGTACAGTCCCTTCGGCTATGTGTGTCAGTTGGATATGATTTTCA
AGTATCCCCCCAAAGGTTCATGTGCTACAAGTTTGTGCCTTTGAGGTACC
CACAGCAAGATTGTTTGTCATAGGACTTTTTAGAGCTCACTCTCGAGACC
AAGATTCTTGAGGAGTTTGAGTGTCCCTCGCATCCTCAATCAGGTTGATG
TAGTGCTTCCAGGAACTGAGTTCGTGCCCATAAGAGGGAGTTAGCAGAAN
AGGGGCAGCCTGGGCCCCTGAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_e22.b1 MSMg01no214_e22.b1 CHROMAT_FILE:
MSMg01no214_e22.b1 PHD_FILE: MSMg01no214_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:35 2005
         (320 letters)



>mm_chr3_130936713_130937432
          Length = 720

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatttcagtggaagaaccccatgactgcaactagtcaaaagattacttcagaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatttcagtggaagaaccccatgactgcaactagtcaaaagattacttcagaga 264

                                                                       
Query: 65  gactgcaagggagggcccactgagccgcccctggcaagcctcggtaccacctgcccaggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gactgcaagggagggcccactgagccgcccctggcaagcctcggtaccacctgcccaggg 324

                                                                       
Query: 125 cttgctcatccttgtcccatggctggctggaggtgttgctgggggaagtgtcacttgtat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttgctcatccttgtcccatggctggctggaggtgttgctgggggaagtgtcacttgtat 384

                                                                       
Query: 185 ttgtaaaatccttctccggtcttcttgcccagcttcttctgggccaccagattattcatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgtaaaatccttctccggtcttcttgcccagcttcttctgggccaccagattattcatg 444

                                                                       
Query: 245 gaaggactgggctgaaataaggggttctctggctccatttcatgccaccctgttgagaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaggactgggctgaaataaggggttctctggctccatttcatgccaccctgttgagaga 504

                           
Query: 305 aagggcacaggttcac 320
           ||||||||||||||||
Sbjct: 505 aagggcacaggttcac 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no214_e22.g1 MSMg01no214_e22.g1 CHROMAT_FILE:
MSMg01no214_e22.g1 PHD_FILE: MSMg01no214_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:35 2005
         (292 letters)



>mm_chr3_130999513_131000204
          Length = 692

 Score =  507 bits (262), Expect = e-148
 Identities = 283/290 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctccttgctatttccagcttctttgacctggtggtcctctctccatcttcagagccagc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tctccttgctattttcagcttctttgacctggtggtcctctctccatcttcagagccagc 541

                                                                       
Query: 61  agagctgtagccctcaggccatgcttccgtattcacatcttcttctgactgaagtcggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 agagctgtagccctcaggccatgcttccgtattcacatcttcttctgactgaagtcggtt 481

                                                                       
Query: 121 aggcaaggccatctgattttaaagcccatgcggcttggggatgggcgcatgtcctaagaa 180
           ||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||
Sbjct: 480 aggcaaggccatctgattttaaagcccatgcggtttggtgataggcgcatgtcctaagaa 421

                                                                       
Query: 181 tatgtcactagatggttttactatgtgcaagcgtcacagagtacacttaaactgacgtaa 240
           |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 420 tatgtcactagatggtttcactatgtgcaagcatcacagagtacacttaaactgacataa 361

                                                             
Query: 241 ccgtagtgtcactaggcaatataacctcacagggccatcttgttgatgtg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ccgtagtgtcactaggcaatataacctcacagggccatcttgttgatgtg 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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