BAC Information

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BAC

Clone NameMSMg01-214J05
Chromosome3 (Build37)
Map Location 89,374,379 - 89,478,644
singlet/doubletdoublet
Overlap geneKcnn3
Upstream geneLOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk
Downstream geneLOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214J05.T7 (MSMg01no214_j05.b1)MSMg01-214J05.TJ (MSMg01no214_j05.g1)
ACCAG395170AG395171
length730727
length of high quality
(start - end)		686 (45 - 730)653 (73 - 725)
definitionCHROMAT_FILE: MSMg01no214_j05.b1 PHD_FILE: MSMg01no214_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:56 2005CHROMAT_FILE: MSMg01no214_j05.g1 PHD_FILE: MSMg01no214_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,374,379 - 89,375,052)(89,478,045 - 89,478,644)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACATCACGAAGCCCCTGGAGAGAAGCTGCAAGCACCATCAGTTACA
ACTTGTGTTATTTCATTAGCTGACTCAGGGGGACAGGGCTTATCTACTCC
CTGTCTGGATCTCACGGAAGCCTCTGCACACTTCTTTAGTTTCCTCTAAT
GTGACAGAAACATAACGATAGTGATAAGATATGAGTTTTCAACTTTATGA
GTTTGGAACCCAAGGGACCCAAACTGGAGATTTTCATTTATTAGGTATAT
AAAAGTGGATATTTTTTATTAAATACCAATAGGGTTTTCAGAAGTCAAGG
AACTTGTTTAAAATTATAGGCCATAAATTATAGTCAAGAGACAGCTCACA
TTTGTAAACAGCTCACCCACTGTGGTGCTGTTGTCCAGGAGATCCAAGCA
GCCTCCTGGGTGATCACAATGTACTGTCACCAAGACACGATGCCTGTGAT
ACAGGAGGTGTCGCTGCTGCAGGCTCTTTGGGGTCCTTTTGCTAAATAGG
TTAGTGGCATCTTCTCATCAGGGGACAGGCAGACAGTCCAGTCTTTCTCT
TTGCCTCCCTCTTCCTAGAGAGAAGTGAACTCAAATCTGAACTCACATTC
TGAACTTAGAAGGTGACCTGGCCTTAAGAGGAAGGGTGTGACAGCTGCGC
TCTGAACTGATGTCTCTAAATTAGCGAGTN

CGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACATCTCTCCTTGCCCTGCTTGCTGTGA
CAAATAGGAGAAGCCTCACCAGATTGGGAATGTGTCTGAATGTCTAAGGA
GAGTCCTCACTGAGGGATTCTGGCTTCCTCATGGAGGGACAGGGAACCAG
GAATGTCCCATTTCTGCAGTATGCTGAGGAGAGACTTGGGAGCCTTCTAT
CCAGGGCTCACTCATGGCTCCACCTTATACTCTGAAGGCCCATGATCATA
GTCTAAAAGGGGGCGTTGAGGTGGCTCAAAGCTGTCACTTGAGTGGTTTT
TCACATCAGACTAGAGAAAGGCCACCTCCAATTGACATTACAGTTCATGT
ATGTCATTTAAACTGTGCACTATCAAATGGAATTTTAAGATCACATAAAC
CCATCTTTATCCTTACAATCATATAAGAGCTGTCCATCATCAAACAATTT
GGTAAATGAGATTTGAGAAAGAAATAGCTGAATTATTGGTTACCATTGCA
GTACGGTGAGGGAGGCCAGCACTTCTCAGTGTTGGTTGCATATAGATCAC
CAGGAGCACTGGTTAAAATGCTAATTGTGATTGAGCGGGCCTGGCACAGA
ACCTATTTCTGACAAGCTAGTGGGGGATGTGAATGCCACCGGTCTTTGGC
TCTCACCTGGAGTACCAAGGATTAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_j05.b1 MSMg01no214_j05.b1 CHROMAT_FILE:
MSMg01no214_j05.b1 PHD_FILE: MSMg01no214_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:56 2005
         (686 letters)



>mm_chr3_89374175_89375260
          Length = 1086

 Score = 1255 bits (649), Expect = 0.0
 Identities = 670/681 (98%), Gaps = 7/681 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacatcacgaagcccctggagagaagctgcaagcaccatcagttacaacttgtgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacatcacgaagcccctggagagaagctgcaagcaccatcagttacaacttgtgt 264

                                                                       
Query: 65  tatttcattagctgactcagggggacagggcttatctactccctgtctggatctcacgga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatttcattagctgactcagggggacagggcttatctactccctgtctggatctcacgga 324

                                                                       
Query: 125 agcctctgcacacttctttagtttcctctaatgtgacagaaacataacgatagtgataag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcctctgcacacttctttagtttcctctaatgtgacagaaacataacgatagtgataag 384

                                                                       
Query: 185 atatgagttttcaactttatgagtttggaacccaagggacccaaactggagattttcatt 244
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atatgagtcttcaactttatgagtttggaacccaagggacccaaactggagattttcatt 444

                                                                       
Query: 245 tattaggtatataaaagtggatattttttattaaataccaatagggttttcagaagtcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tattaggtatataaaagtggatattttttattaaataccaatagggttttcagaagtcaa 504

                                                                       
Query: 305 ggaacttgtttaaaattataggccataaattatagtcaagagacagctcacatttgtaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggaacttgtttaaaattataggccataaattatagtcaagagacagctcacatttgtaaa 564

                                                                       
Query: 365 cagctcacccactgtggtgctgttgtccaggagatccaagcagcctcctgggtgatcaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagctcacccactgtggtgctgttgtccaggagatccaagcagcctcctgggtgatcaca 624

                                                                       
Query: 425 atgtactgtcaccaagacacgatgcctgtgatacaggaggtgtcgctgctgcaggctctt 484
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 625 atgtactgtcaccaagacacgatgcctgtgatacaggaggtgtcgctggtgcagactctt 684

                                                                       
Query: 485 tggggtccttttgctaaataggttagtggcatcttctcatcaggggacaggcagacagtc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggggtccttttgctaaataggttagtggcatcttctcatcaggggacaggcagacagtc 744

                                                                       
Query: 545 cagtctttctctttgcctccctcttcctagagagaagtgaactcaaatctgaactcacat 604
           |||||||||||||||||||||||||||||||||||||||||||||||||       ||||
Sbjct: 745 cagtctttctctttgcctccctcttcctagagagaagtgaactcaaatc-------acat 797

                                                                       
Query: 605 tctgaacttagaaggtgacctggccttaagaggaagggtgtgacagctgcgctctgaact 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 798 tctgaacttagaaggtgacctggccttaagaggaagggtgtgacagctgcgttctgaact 857

                                
Query: 665 gatgtctctaaattagcgagt 685
           |||||||||||||||||||||
Sbjct: 858 gatgtctctaaattagcgagt 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no214_j05.g1 MSMg01no214_j05.g1 CHROMAT_FILE:
MSMg01no214_j05.g1 PHD_FILE: MSMg01no214_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:56 2005
         (653 letters)



>mm_chr3_89478045_89479093
          Length = 1049

 Score = 1040 bits (538), Expect = 0.0
 Identities = 573/600 (95%), Gaps = 24/600 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   acatctctccttgccctgcttgctgtgacaaataggagaagcctcaccagattgggaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 600 acatctctccttgccctgcttgctgtgacaaataggagaagcctcaggagattgggaatg 541

                                                                       
Query: 61  tgtctgaatgtctaaggagagtcctcactgagggattctggcttcctcatggagggacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tgtctgaatgtctaaggagagtcctcactgagggattctggcttcctcatggagggacag 481

                                                                       
Query: 121 ggaaccaggaatgtcccatttctgcagtatgctgaggagagacttgggagccttctatcc 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggaaccagaaatgtcccatttctgcagtatgctgaggagagacttgggagccttctatcc 421

                                                                       
Query: 181 agggctcactcatggctccaccttatactctgaaggcccatgatcatagtctaaaagggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agggctcactcatggctccaccttatactctgaaggcccatgatcatagtctaaaagggg 361

                                                                       
Query: 241 gcgttgaggtggctcaaagctgtcacttgagtggtttttcacatcagactagagaaaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gcgttgaggtggctcaaagctgtcacttgagtggtttttcacatcagactagagaaaggc 301

                                                                       
Query: 301 cacctccaattgacattacagttcatgtatgtcatttaaactgtgcactatcaaatggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cacctccaattgacattacagttcatgtatgtcatttaaactgtgcactatcaaatggaa 241

                                                                       
Query: 361 ttttaagat------------------------cacataaacccatctttatccttacaa 396
           |||||||||                        |||||||||||||||||||||||||||
Sbjct: 240 ttttaagataacacccatctttatcctcacaatcacataaacccatctttatccttacaa 181

                                                                       
Query: 397 tcatataagagctgtccatcatcaaacaatttggtaaatgagatttgagaaagaaatagc 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tcatataagagctgtccatcatcaaacaatttggtaaatgagatttgagaaagaaatagc 121

                                                                       
Query: 457 tgaattattggttaccattgcagtacggtgagggaggccagcacttctcagtgttggttg 516
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tgaattattggttaccattgcagtacggtgagggaggccagcacttctcagtgttggttg 61

                                                                       
Query: 517 catatagatcaccaggagcactggttaaaatgctaattgtgattgagcgggcctggcaca 576
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  catatagatcaccaggagcactggttaaaatgctaattgtgattgagcgggcctggcaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1049
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1039
Effective search space:   668077
Effective search space used:   668077
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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