BAC Information

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BAC

Clone NameMSMg01-216O21
Chromosome3 (Build37)
Map Location 45,597,485 - 45,597,819
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282, LOC433580
Downstream geneLOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216O21.T7 (MSMg01no216_o21.b1)MSMg01-216O21.TJ (MSMg01no216_o21.g1)
ACCAG396632AG396633
length834718
length of high quality
(start - end)
---643 (76 - 718)
definitionCHROMAT_FILE: MSMg01no216_o21.b1 PHD_FILE: MSMg01no216_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:08 2005CHROMAT_FILE: MSMg01no216_o21.g1 PHD_FILE: MSMg01no216_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAGGAATCCGC
GGAATACTCATAAGTCTTTTCTCATCTGTGAAAAAGTCCAGAAAGCTCCT
TCTAAGAACTCAACAAAATAATCGTAATTTATTAACCCCCCTGTTAAATT
AAANAAAAAACAAGAAATTCTATAATTTCCAATAATAGACTGCCCACAGT
AGCTGAAGTTAACTCGCCATGATTCGGTCCTTCTGGGGAGTCTTTCTACA
GGTATTTGCAAGCCTGGAGCCAATAAGAATTGTATGGAACGACTAANTTT
CCCTGACCATTTAATAAAAAATGTGTATTGGTTGGGGAAAGATATTTATN
GCTGGTAGTAGAGAATGCAACCGAANCACTTAATTCTCATTACTACAAAA
GTGAGTTTGTTTNCCTTGCCCGCCATAGACTGTTCATAGAGACCTCTCTC
TGGTGAATCCTAAGCCTTGGGGATAGCATATGACTGTACCAAACTTTACA
TGGATGTGTAATTATANGACTAATTTTGTTGGACCCTTCACAAACTTTTA
TTAAAACAAGAATTCACAGCGCGCATTGAACCTGCACCAAGCTTTTGGAA
AAACNGCCGAATAGATCTTCCAGTCTAACTCCTGAAGGCTTGTGGATAAT
GGCAATACCAAAAACAANAAAGCTTGGTCTTTTCATGTTGTTACAGATAT
CTCGTGCTGGACTACTAAGGGCNAGACTTGGGAGTGGTCCATNCTTTCAA
AGCTTTTAACCCATTAGGNTAATAGGGACCNTTTCGGGTTNTACTCCTGN
GCTGGTACACTTCTAAATTTCAAGGNNCGTTCAN
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTTTGCCAAATTCAAGGGCATCTGTAGAGCTTCTTTA
TTGCATAATGTTTAGTTGGGACATTTCCTTATTTACTCGTTGGTTTGTTT
GTTCTTTACTCTTTAATTTACTTTCATTTATGTATTTATTTATCTATTTT
TACCTTGCAGATCCTTTGCCTATATGTTATGGCTGTGGTTTTGAGTTTCT
ATGGGATTATTGTGTGCATGAATGTACACCTGTATGTATCCCATTTTTAT
GCTTTTTCTTTGGCTCTTTTTCCACTGTTGTTTGTTGTTTGAATTTGTTT
TAGCTTATCTTAGTTTAGTATTATTATTATATATAAGTCTGCTTATTTTC
TAGGGCAGAGAGAAAGGGAATAGATTGAGATGGAAGAGAGTGCGGGAGAA
TCTAAAAGGAATTGAGGAAGAAACTAAATATACTATATGAAAAAATATTT
TCAATAAAAGAAGAATGAAAAAACAATACTCACTTTTCTCTATCTTTCTG
TCTCTCTGTCTCTCTCTCTGTGTCTTTCTCTGTCATTGATATGCACACAT
ACACATGCAGTTGTACACACATACATATATATTATTTTCTGGATAACACC
GAAAATTATAAATTCATATATCCACATCTGTATGTTAGTCACTCCCTATA
TACATATGGAAAGACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_o21.g1 MSMg01no216_o21.g1 CHROMAT_FILE:
MSMg01no216_o21.g1 PHD_FILE: MSMg01no216_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:09 2005
         (643 letters)



>mm_chr3_45596777_45597819
          Length = 1043

 Score =  555 bits (287), Expect = e-162
 Identities = 318/335 (94%), Gaps = 12/335 (3%)
 Strand = Plus / Minus

                                                                        
Query: 320  attttctagggcagagagaaagggaatagattgagatggaagagagtgcgggagaatcta 379
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1043 attttctagggcagagagaaagggaatagattgagatggaagagagtgcaggagaatcta 984

                                                                        
Query: 380  aaaggaattgaggaagaaactaaatatactatatgaaaaaatattttcaataaaagaaga 439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983  aaaggaattgaggaagaaactaaatatactatatgaaaaaatattttcaataaaagaaga 924

                                                                        
Query: 440  atgaaaaaacaatactcacttttctctatctttct--------gtctctct----gtctc 487
            ||||||||||||||||||||||| |||||||||||        ||||||||    |||||
Sbjct: 923  atgaaaaaacaatactcacttttttctatctttctatctctctgtctctctctctgtctc 864

                                                                        
Query: 488  tctctctgtgtctttctctgtcattgatatgcacacatacacatgcagttgtacacacat 547
            |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 863  tctctctgtgtctttctctgccattgatatgcacacatacacgtgcagttgtacacacat 804

                                                                        
Query: 548  acatatatattattttctggataacaccgaaaattataaattcatatatccacatctgta 607
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 803  acatatatattattttctggataacactgaaaattataaattcatatatccacatctgta 744

                                               
Query: 608  tgttagtcactccctatatacatatggaaagacac 642
            |||||||||||||||||||||||||||||||||||
Sbjct: 743  tgttagtcactccctatatacatatggaaagacac 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)