BAC Information

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BAC

Clone NameMSMg01-216P09
Chromosome3 (Build37)
Map Location 149,466,739 - 149,466,995
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn2, LOC100040368, LOC668893, EG381483, LOC100040620
Downstream geneLOC100040633, LOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216P09.T7 (MSMg01no216_p09.b1)MSMg01-216P09.TJ (MSMg01no216_p09.g1)
ACCAG396651AG396652
length724687
length of high quality
(start - end)
256 (430 - 685)235 (77 - 311)
definitionCHROMAT_FILE: MSMg01no216_p09.b1 PHD_FILE: MSMg01no216_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:11 2005CHROMAT_FILE: MSMg01no216_p09.g1 PHD_FILE: MSMg01no216_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATACTTCCAACTGGTTTTGACTCAGTTTCCCCTGATATTTTGAGG
TGTAAGTTAAGGTTATTGCCTTTATGCTTTATCATGTTATATCTTAACGA
TATAACTATGTGAGCCTGGCATTGGAATAACCTTAGCCAAAACAAAACAA
ACAAACAAAAACCAAAACAAACTAAAACCCAAACCAAAACACACAAACCT
ATAAATTGCTTTGTTTTCATCCAAAATTAAATTTTCTCTTTTCATCTCCC
CTTGAGTGGAAAACCCGGTGCATCATTTGATTGATGTGTTTTCCATGCAG
CCGTGAGTCNGTGCCCTGNCCTGTTCCTGTGCATTCTTATTCTTAATTTT
TTAAAGCAGAATTCGCTGAACAAAACAAATCCATTTTAAGTATAATATAC
TTTTCAACAGAAAAAAAATTTTAAAAGATTCCTCAAAGGTAAAAATTAGT
TTTCATTGTATTTCTTTGACTGAAGCTGACACCTGGCTCCTGTGTGGTGC
AAGGAGACATAGGGTGGAAACCTCACTGGCTTTGGTGTGTCCTTTCCTGT
GAATTCTGCCAGGTGGCAAGACCTGGGTTGTTATGGCTCCACAGTGAGAG
CAATGGTGAGGTCTCCAGAACTGTCTCCCCAAAGTCTGACCCCCCCTAGT
GAGTCTTTTTCTAACACCTTTACN
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAAAACTTTTTTTCATAAAAA
ACAAAACAAAAGGAAAGCAAAACTAGCTCTGGGTCAGCAGGCAGCTCAAG
GATAAGGCAATAGCTNAATAATGGTTTCTCAGTCAGTTGACAATTCTACT
AAACAACTCAAAAGAGGCCTTTCTCGTGTCTGGTATTTGAGATTTTTTAG
ATGCTCTATGGCTTTTTAACTTTTCACATAAACTATATGTGTATATTTAT
ATACCTATTTATGCGTAGTATATGTAACCACCATGGCCAAGGGNGGAAAT
TATCCCCTGATATTTTATTTGTTGCCCCCACCCTCCGCCCCCAACGTGGA
TTGGCCGTTTGGCTGGGACCCACCCCCCCGACAAAAAAAAAAACAGGGGA
AAAAAAGGTTTGTATTGTTCCCACCCTTTCCTGGGTAGAAAAAAAACAGG
GCTTCCTTACAGGGGAAAAGAACCCCGGAAAAAACGGGACATTAACGGGG
GGGGGGGGTTTTAAAAAACATCCCCCCCCAAAAAAAATTCTCCCCTCCCC
CCGGGGTTTATATTCTGTTGCCTTCACCTTTTTTTTTTCCCCCCCTTCTT
CTTTCCCCCCCCTAAACAACGCACTCACCCTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_p09.b1 MSMg01no216_p09.b1 CHROMAT_FILE:
MSMg01no216_p09.b1 PHD_FILE: MSMg01no216_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:11 2005
         (256 letters)



>mm_chr3_149466539_149467195
          Length = 657

 Score =  474 bits (245), Expect = e-138
 Identities = 254/257 (98%), Gaps = 1/257 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccattttaagtataatatacttttcaacagaaaaaaa-attttaaaagattcctcaaag 59
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 201 tccattttaagtataatatacttttcaacagaaaaaaattttttaaaagattcctcaaag 260

                                                                       
Query: 60  gtaaaaattagttttcattgtatttctttgactgaagctgacacctggctcctgtgtggt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaaaattagttttcattgtatttctttgactgaagctgacacctggctcctgtgtggt 320

                                                                       
Query: 120 gcaaggagacatagggtggaaacctcactggctttggtgtgtcctttcctgtgaattctg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaaggagacatagggtggaaacctcactggctttggtgtgtcctttcctgtgaattctg 380

                                                                       
Query: 180 ccaggtggcaagacctgggttgttatggctccacagtgagagcaatggtgaggtctccag 239
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ccaggtggcaagacctgggttgttatggttccacagtgagagcaatggtgaggtctccag 440

                            
Query: 240 aactgtctccccaaagt 256
           |||||||||||||||||
Sbjct: 441 aactgtctccccaaagt 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 657
Length adjustment: 9
Effective length of query: 247
Effective length of database: 648
Effective search space:   160056
Effective search space used:   160056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)