BAC Information

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BAC

Clone NameMSMg01-217B06
Chromosome3 (Build37)
Map Location 86,087,620 - 86,087,904
singlet/doubletsinglet
Overlap geneLrba
Upstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201
Downstream geneMab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217B06.T7 (MSMg01no217_b06.b1)MSMg01-217B06.TJ (MSMg01no217_b06.g1)
ACCAG396728AG396729
length759770
length of high quality
(start - end)
235 (131 - 365)289 (81 - 369)
definitionCHROMAT_FILE: MSMg01no217_b06.b1 PHD_FILE: MSMg01no217_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:23 2005CHROMAT_FILE: MSMg01no217_b06.g1 PHD_FILE: MSMg01no217_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAAATAACTTTTCCTAATATGAGAGATTCGGTGTCAAAAAAAAA
AAATCAGTTTTCTCCAATGGATTCTCCCTGGATATACAAATCACATTTAA
GAGCAGGCCCCATGCCCAACAGTATACAGCCACCACAAAATGAGCTCAGA
GGCCGTGCAGGAGGGTTTCTGTCTCACTATGCCTTGCTGGGCTTTTTGTT
TGTTTGTTTTTGTTTATCATTATAAGTCTTTCACTTGTGTATTTTATGGT
TTCCAATCTTATTTTTTCTTATGGTAGTTCATTGTATGCAGATGTGTGTC
TCTGGGTCTGTTTGTTTTGTCCCTTTTCCCTGCTCCTTTTTTTTTTTTCT
GTTTATTTTGTCCTATTCTGGCCCCCCCAAAAAGAAACAAGAATTTTCTT
TTTTCTTCCTCCCTATCTCCCTCCTTATATCTCTCTATAATCTTCCCTAT
TCCGCCTTCTTTTTCGCTTTCCCCTTATTCTTTTGTCTTTTCTTCTCTCC
CTATCCTTTCTCTTTACTTTATCTTTCGCCATCTCTCTCCCCCTCCCCCT
TTTCTTTTTTCTCATATTGTTCCCCTCTCCCTTTTCCCTGTTTTTCTTTT
CGCCGCCTCATATTTTCGTCTTCCCCCTACCTACTTTCCTTACACCCTTA
GTCCCCTCCTATACCTTTTTTTCTTTACCCCCCTCCGCCATGTCTCTTTT
TCCTTTTTN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCTTGGACTACCAAAGACCT
TGTCTCAAAAAAGTGATTAGTTAACTCCTTGGGAAAAAAGATTTTGTAAA
GATTTCTGGACTTGTCACTGATAAACTTAATTAATATGAATTAAAATTCT
GTCTAGGGTCTATAGTTCAGTGATAGAGTGCTCACCTAGTATGTATAAGA
CTCTGAGCTTAAAGATCAAAACTTCAGGTGACAGCAGATGCTGGAGAGGA
TGTGGAGAAAGAGGAACACTCCTCCACTGCTGGTGGGATTGCAAGCTTGT
ACAACCACTCTGGAAATCTTTCTGTCCCCCCACCCCCTTGGACATAGTAC
TACCGGAAGATCCAGCAATACCTCTCCTGGGACTATAACCAGAAGATGTT
CCAACTTGTAATAAGGACACATGCTCATTTATGTTCATAGCAGCCTTATT
TATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAAT
GGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATT
AAAAACAATGGATTTATGAAATTCTTAGGAAAATGGATGGAACTAGAAAA
TATCATCCTGAGTGAGGTAACCCAAACACAAAAGAAGTCACTTCATATGC
ACTTACTGATAAGTGGATATTAGCCCAGAAAGTTAGAATACCCAAAATAC
AATTTGTAAAACACAAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_b06.g1 MSMg01no217_b06.g1 CHROMAT_FILE:
MSMg01no217_b06.g1 PHD_FILE: MSMg01no217_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:23 2005
         (289 letters)



>mm_chr3_86087575_86088263
          Length = 689

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   tggactaccaaagaccttgtctcaaaaaagtgattagttaactccttgggaaaaaagatt 63
           ||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||
Sbjct: 330 tggactaccaaagaccttgtctcaaaaaattgattagttaactagttgggaaaaaagatt 271

                                                                       
Query: 64  ttgtaaagatttctggacttgtcactgataaacttaattaatatgaattaaaattctgtc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttgtaaagatttctggacttgtcactgataaacttaattaatatgaattaaaattctgtc 211

                                                                       
Query: 124 tagggtctatagttcagtgatagagtgctcacctagtatgtataagactctgagcttaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tagggtctatagttcagtgatagagtgctcacctagtatgtataagactctgagcttaaa 151

                                                                       
Query: 184 gatcaaaacttcaggtgacagcagatgctggagaggatgtggagaaagaggaacactcct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gatcaaaacttcaggtgacagcagatgctggagaggatgtggagaaagaggaacactcct 91

                                                        
Query: 244 ccactgctggtgggattgcaagcttgtacaaccactctggaaatc 288
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  ccactgctggtgggattgcaagcttgtacaaccactctggaaatc 46


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)