BAC Information

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BAC

Clone NameMSMg01-217J19
Chromosome3 (Build37)
Map Location 21,706,724 - 21,707,017
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665094, LOC100040325, 7530428D23Rik, LOC100039465
Downstream geneLOC100040353, Tbl1xr1, LOC545506, LOC675593, LOC100040378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217J19.T7 (MSMg01no217_j19.b1)MSMg01-217J19.TJ (MSMg01no217_j19.g1)
ACCAG397079AG397080
length742715
length of high quality
(start - end)
---296 (120 - 415)
definitionCHROMAT_FILE: MSMg01no217_j19.b1 PHD_FILE: MSMg01no217_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:16 2005CHROMAT_FILE: MSMg01no217_j19.g1 PHD_FILE: MSMg01no217_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTGGCGGCGCTCAACGAGGCGTATAGGTTCGNAACGCNNNNANNNNN
GGNNNTTGACGAGAGAAGNAGGNNNNNGANNGGNGNNGANNNNNNNNNNN
NNNNANNNGTGNTCCCAAAAAAAAGGGGGGGNNGNANNNNANNNAGGNGN
AANAGAAAGGAGNAAAGGNAANNNAGAAAAAANGNANANNGAAAANNGAA
AANAAGGNANAAAGGAAAAAAAGGGNAAGANANAAGGGATTTTTTTGAAA
NGAGNAAANNGNNNNGAAGAAAGAAGAGNNAAANAAGAAGAAAANNANAA
AANNAAATTGGGTGGAATTGANGAAGNNNNGAAGAAAGAGGANAANNGTT
TTTTTTTTTTTCCCCCCCCCCCCCCACAAGGAANGANANAGAGNNGAGGG
GGGGGGGGGNCCAAAAAAAAAGAAAAAAAANGNNGGACGCNNNGGGGGGG
NNNNGAGAGAGAGAAACAGACAGAGAAAGAAAGAACCAGACACACCGAGG
ACGACACCCCGACCGCAGACACGAGNACAAAGGACCAAGAAAGAAAACCC
CAACCCCCCCAAGCCGACGAAACCCCCGCAACCCAANAACGACCAAACAC
GACCAAAACCGGGCCCGCACACCCGCCAACCAAACAAAAGGAGAACCTTT
TTTTTTTTTTTTTTAACAAAACAAGCAACCCCCCCCTTTTTTTCTTATTT
CCTCTCCCACCCATACCTTTATTTCTATGCCATTCCGCAACG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATCGCGAAAAAAATACAAATACAGTCTGTGCATGCTTCCCAAAG
ATGGCCAACATATCAATCACAGTTCTCCACAGTGTCACACACTTTCATTT
ATCTTTCTTTCTTTCCGCTTTGCATTTTTTCCTCTTCCTCTTGTAACCTT
GGTTAACCTAGAACTTACTACGTAGACCAGGCTGTTTTGGGATGCACAGA
GGTGTTCCTGTCTCTACCTCCCAAGTGCTATCATTTCAGGCACACATCAC
CATGCCTAGCCCCTCATGTAGTCATGAGTAAACACATGAGGTATGCCCCT
CTCTTTACTGTTAAAATGAACCCCACATGTCTTGAGCTTAGCTCTGGGCA
GAAAGACTTGTTACATCTCTGATCAAAAGATATGGTATAAGTGCTGTTAT
TTCTGACTTCGATGACTAGGCCATGAAAGGATGGAATGAAGTGTGATGGC
TCAGGTTGTAATCCCAGCACTTAGGAAGCTGAGGCTTAAGGATTTTTGGA
AGTCCCTGAATGCTTAGTCTACACACAATTCCATGGTTTGCCAGAGCTAC
ACAGTGACAGCCTGCCCTAGTTAGTTAGTTTGTTAATTAGTTAGTTAGAC
AGACAGAACTTCAATATTTTATGTTCAGCTCTTCCCTTGGTCAGCTACCA
TCCTGTGGAAACTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_j19.g1 MSMg01no217_j19.g1 CHROMAT_FILE:
MSMg01no217_j19.g1 PHD_FILE: MSMg01no217_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:16 2005
         (296 letters)



>mm_chr3_21706333_21707028
          Length = 696

 Score =  522 bits (270), Expect = e-153
 Identities = 289/296 (97%), Gaps = 2/296 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttctccacagtgtcacacactttcatttatctttctttctttccgctttgcattttt 60
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagttctccacagtgt--cacactttcatttatctttctttctttccgctttgcattttt 628

                                                                       
Query: 61  tcctcttcctcttgtaaccttggttaacctagaacttactacgtagaccaggctgttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcctcttcctcttgtaaccttggttaacctagaacttactacgtagaccaggctgttttg 568

                                                                       
Query: 121 ggatgcacagaggtgttcctgtctctacctcccaagtgctatcatttcaggcacacatca 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 567 ggatgcacagaggtgttcctgtctctacctcccaagtgctatgatttcaggcacacatca 508

                                                                       
Query: 181 ccatgcctagcccctcatgtagtcatgagtaaacacatgaggtatgcccctctctttact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ccatgcctagcccctcatgtagtcatgagtaaacacatgaggtatgcccctctctttact 448

                                                                   
Query: 241 gttaaaatgaaccccacatgtcttgagcttagctctgggcagaaagacttgttaca 296
           | |||||||||  | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggtaaaatgaagtctacatgtcttgagcttagctctgggcagaaagacttgttaca 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)