BAC Information

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BAC

Clone NameMSMg01-218G05
Chromosome3 (Build37)
Map Location 36,837,568 - 36,837,886
singlet/doubletsinglet
Overlap gene4932438A13Rik
Upstream geneMccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3
Downstream geneTenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218G05.T7 (MSMg01no218_g05.b1)MSMg01-218G05.TJ (MSMg01no218_g05.g1)
ACCAG397576AG397577
length763836
length of high quality
(start - end)
321 (43 - 363)87 (76 - 162)
definitionCHROMAT_FILE: MSMg01no218_g05.b1 PHD_FILE: MSMg01no218_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:23 2005CHROMAT_FILE: MSMg01no218_g05.g1 PHD_FILE: MSMg01no218_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTTACATAAGGTACTTACTTGGCTTTATTGCTTCGATTTCTAAATCT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATACACAACT
GAATTACAAGTGGATAGTTAGTATAATAGTAAGATAAAATAGGAATTTTA
ACAATAAACATGTAAATGAATATAAAATTCTTACATTATTTATATTTGTG
AATTGTTTTCATACTGGCCTCATTTTAGATACAACTAAATAAGAATTTAC
AAAATCATTAATTGAAAATAGTGAGCTATTAACTTCATGGCTATATACAT
TTGATCTAAAGTTTTTTTCTACCGCTTCATTCCCAAATGGTATGAATGGT
TACAGTATTGACAGCACACCTGTTGACATAACTTGGATTCACAGAACCGG
CGATCAATTCCATGTTGGCATACTATAACTGACTTTGGTCTTTCCAGTTC
ATACTCCCGACATACCACATGGAAAACAAATGTCTGCCCCCATTCCAAGA
GACATGCCAGCTACAGGTAATAACAGGGTGACAATATTATTAGCCTCCTA
AACAAGTATCCAGGATTCAAAAGTTTACAAAGTCTAACATGACTGAAAGA
ACTCAATATTGTGTAGCTGCTACTTAATAAATACTGGCTAACCAATGATA
TTCTACCTTGATATCATTTATAAGCTTGTTGCTTTCCATTTGGGAATATC
ACATACATTACTA
ATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACCTGGAGCAGACTCAAACATCTG
AGCAGGGACACAGTTCAGGAAGCACCGGGCTCTGAGCAGATGGATGTCCC
ACCCAGTGTGTGTGTGTGTGGTGGGGGGGTCTCAACATTTTCCTTTTATG
GGATACAGGATTTTCTTTACCCTTTTCCTGGATGTTGGCAAAGAGTTTCT
GGGCTTGATAAGGTGATTACTCATGGGGTGGGTGGATTTTTGCTCTTAAC
AGATGTATATATGTGGGGTTTTAAAAGGGTTTTTTATGGTGGGGGAAGTG
ACCTCAATTTGGATAAAAGGGTTTTTTTTATATTTTCCCCCCCCCCCCCC
CCCTCTTATTTTTTTTTGTGTTTGTGGTGTTTTCGTCCCCCCCCCCTTTT
AATAAAAAAAAAAATAAATTTTGGCGGGGGGGGGTGGGGTATCCTCAATT
GTCCCTTTTTTTTTTCTTTCTCACATATTATTCTTCATATAATCGCTCTG
GGTTTGCAACTTGGATAGCTTTTTTTTTAACATAAATAAGGTGTGAGTCG
TCTCATATCATTTCTCTCTTCTTTTTTTTTTTTTTTTTTTCTTCTTTTTT
CGTTTATTGTTTTTAATTCAATATAATTTATACTTATCTTTCGTACCCGA
TATTAAATATTATCAATTTTAGACCACACTTATTAATCAATATTATTTCT
ACCTATTCGAATTTTATACCCCTCTCTTAGTTTTTAGTTATAATTTTTTT
TTCTTTACTTTCTCCCCCTCCAACTCTGTGCGCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_g05.b1 MSMg01no218_g05.b1 CHROMAT_FILE:
MSMg01no218_g05.b1 PHD_FILE: MSMg01no218_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:23 2005
         (321 letters)



>mm_chr3_36837268_36837988
          Length = 721

 Score =  598 bits (309), Expect = e-175
 Identities = 315/319 (98%), Gaps = 4/319 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttacataaggtacttacttggctttattgcttcgatttctaa----atctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||
Sbjct: 619 gaattcagttacataaggtacttacttggctttattgcttcgatttctaaatctatctat 560

                                                                       
Query: 61  ctatctatctatctatctatctatctatctatctatctatacacaactgaattacaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctatctatctatctatctatctatctatctatctatctatacacaactgaattacaagtg 500

                                                                       
Query: 121 gatagttagtataatagtaagataaaataggaattttaacaataaacatgtaaatgaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gatagttagtataatagtaagataaaataggaattttaacaataaacatgtaaatgaata 440

                                                                       
Query: 181 taaaattcttacattatttatatttgtgaattgttttcatactggcctcattttagatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taaaattcttacattatttatatttgtgaattgttttcatactggcctcattttagatac 380

                                                                       
Query: 241 aactaaataagaatttacaaaatcattaattgaaaatagtgagctattaacttcatggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aactaaataagaatttacaaaatcattaattgaaaatagtgagctattaacttcatggct 320

                              
Query: 301 atatacatttgatctaaag 319
           |||||||||||||||||||
Sbjct: 319 atatacatttgatctaaag 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)