BAC Information

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BAC

Clone NameMSMg01-218H07
Chromosome3 (Build37)
Map Location 148,881,150 - 148,881,337
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040354, Lphn2, LOC100040368, LOC668893
Downstream geneEG381483, LOC100040620, LOC100040633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218H07.T7 (MSMg01no218_h07.b1)MSMg01-218H07.TJ (MSMg01no218_h07.g1)
ACCAG397620AG397621
length940805
length of high quality
(start - end)
58 (41 - 98)189 (124 - 312)
definitionCHROMAT_FILE: MSMg01no218_h07.b1 PHD_FILE: MSMg01no218_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:28 2005CHROMAT_FILE: MSMg01no218_h07.g1 PHD_FILE: MSMg01no218_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTAGTCTATGTGTGCGTGTGTGTGTGTGTGTGATGTGTGTGTGTGTGGCG
TGCGCGNGTTNTCTTTTCCCCCCCCCCTTTCTTTTGCCCTTTACCTTTCC
CCTTCTTCGCCTTTTTTTTTTCCCCCTTCTTGGGAGGTTGTGGCCGGGCG
CCTTATCGGGTCGTTATTGGTGCTTCAAGGAATATGCACAAAATACACAT
ACAGTCTAAAATTTTTAACCAATGAAATAAATACAGAGGATAAAAGCTAA
GAGTAAACGAAAAAATAAATAAAGTAAAACCAGCTTTTTTTTTTTGGAAA
AAGAGAGGACAGCGAAGGAGAAAAGGAAGAGATTTGGGAGTGAGGTTCTC
CCAGAAACAAAAAGCCCGTTTTTTTAGTTGGGGAGTATTTATGTGTATAT
TGGGGGGNNCCCCCCCCGTGAAATNTTTATTNAAAAAAATCGGTGGTGGG
GGGGGGGGCGGGGGTGCCTTGCAAACAGAAATTTTAACATATAAAGTACA
AAATGTGTTTACGAATAGATTCGCGATACTTATTATCCCTATACCCGTAG
TAGCATATTTACTTTAAGCGTTCTGCGGGCCTTTGATATTAATGAAAGCA
GAGTACAAAATAACAGTGATCAGTTCGAATGTGGGACGCGTAGTGGGAAA
TTTAGCTTCGTGAAGTTGCAGTAGGTGAGAGATGGAGCAGGGTTACATAT
ATACGTATTTATCCTTATAGTGTTGTGTGCCGAGATAGGTGTATTAATGA
CACAAGTGGAAGAAGTGAGTTTACAATTCTATTTCATATTATCATATCCA
TCTATCCCTATGTTCACCAGATTATCCGAGACTTAGAGGGTACGAAAGAG
AAGGTGACAGTTGAGGAACGAGACGGAACAGATAGAAAGA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGGCACTAGCAGGCTTCCAGTTGGTCAC
CTGTCAATGTCTCCTATGCCCCATCATCTGTGATGGGGCTTAAAAGGTAC
TTGCTTTGTCATTTCTTTCCCCAACTTGCACAAGGGATGGAAACAAACAC
CTTAGAGCCATTTCTTCCACAATGTCATTAGATCAGTACTCTTTGGAGTG
AGCTGCCAGTGAGCAGTTCTCCAGGTAAAAGAACATAGTCATCAATAATT
TCAGCGTAAGGAGAGGTGTTTTTGTGTGTGTGTGTGTGTGTGTGCGTTAG
AAATTTTTAAATAAATTCCCAAAACCAAAACCCAGATTTTTTTTAGATAA
ATTTTTTGATTGAGGGCCCCCCCCAAAATTCACTAAAAAATCTCGTTGGG
GGGGGGGCCCTCCTTCCATCCACATTCCCCTTTATAAATTCATTATTCCA
TTCCGACCCCCCTTTATTTTTCTCCCCCCGTTTTTTCGTTCTATCCCCTA
CTCCCTTTTTTCGATTCCTTCATTACCTATACTTCTATCCTTACCCTTTT
TTTTCCCCATCCCTAATATCATCCTATTTGCCTATCCTCCATTCGAATTT
TACTATCCTTTTACCCTACTTTTACCTCCTTAACCCCGATGAGTCCGTCT
AATTTGTATCTCCCCTTTTTCTCCTCATTATTACATATTCTTGCACCCAC
TAACCCTCTTTATTTATATTATTCTTTATATCTTATACCTTATACCCACA
TACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_h07.g1 MSMg01no218_h07.g1 CHROMAT_FILE:
MSMg01no218_h07.g1 PHD_FILE: MSMg01no218_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:29 2005
         (189 letters)



>mm_chr3_148880950_148881538
          Length = 589

 Score =  340 bits (176), Expect = 2e-98
 Identities = 185/188 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatctgtgatggggcttaaaaggtacttgctttgtcatttctttccccaacttgcacaa 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tcatctgggatggggcttaaaaggtacttgctttgtcatttctttccccaacttgcacaa 329

                                                                       
Query: 61  gggatggaaacaaacaccttagagccatttcttccacaatgtcattagatcagtactctt 120
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 328 gggatggaaacaaccaccttagagccatttcttccacaatatcattagatcagtactctt 269

                                                                       
Query: 121 tggagtgagctgccagtgagcagttctccaggtaaaagaacatagtcatcaataatttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tggagtgagctgccagtgagcagttctccaggtaaaagaacatagtcatcaataatttca 209

                   
Query: 181 gcgtaagg 188
           ||||||||
Sbjct: 208 gcgtaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)