BAC Information

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BAC

Clone NameMSMg01-218H19
Chromosome3 (Build37)
Map Location 99,050,298 - 99,050,586
singlet/doubletsinglet
Overlap genenone
Upstream geneHmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2
Downstream geneTbx15, M6pr-ps, Spag17, LOC623045, Wdr3, Gdap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218H19.T7 (MSMg01no218_h19.b1)MSMg01-218H19.TJ (MSMg01no218_h19.g1)
ACCAG397638AG397639
length807724
length of high quality
(start - end)
314 (43 - 356)291 (74 - 364)
definitionCHROMAT_FILE: MSMg01no218_h19.b1 PHD_FILE: MSMg01no218_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:31 2005CHROMAT_FILE: MSMg01no218_h19.g1 PHD_FILE: MSMg01no218_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTAAATGCATCTTGCCCTGGGCTTTCATTAGTTTTTGTAGCTATAAT
AGTCTGTATTGACAGTTGTCATCTTCTACAGCCTGGAATGCATCTTTCCA
TGGCCTTCTGGCTTTAAATGTTTCTGTCAAATAATCAAGTGTCATTCTGA
TGTTCATGCCCTTACCACTTACTTGACTACTTTTCTCTTACACCTTTCAG
CACCCTTTATTCTGTATTTTTAGTGATGTGGTGGTTTGAATGATAACGGC
CCCTCATAGGTTTATATATTTTATTGTCTGACTCCCAGTTGGTGGAGTGT
TTAGGATTTANTTGGAATCCAAAAACAAAAAACCATTTATTTTTTTTTGG
TATTTTGGGGGTTTTTCCCCCCCAAAAACAATNATAAAAATTCTGGTGGG
GGCGGGTTCCTTTCTTTTTATCTTTCTTCCACCTCTTTACTTATTACCTT
AATTTTACATTTCATTTCTATTTTTTCTTTTACACATTCCCTTTCCTCCT
TCTCCCCTTCTCTTCTTTACTTTCTTCCTACCTTTATTATCAACCCCTCT
CCACTTCTTTCATCCTCAATTAATCATCTCCTACTACCCTTATATTTAAT
CATTTCTATAATATTACCCACCTATACACTCAGCACTTCGCTTTCCTTTC
TTTCTTCTATTATTTCTTACCATTTAAAATACACATTAACGTTATTTAAA
TTATTCCCATATTATAATTCCCTTATTTACACCCCCACGCCTAATCTTTT
ATTCTCG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCATAGTGGACAACTGTGCAGCTGCT
GGAGAGGAGATGGACAATTAGATCTGCTTGCCTGTCAATGTCAGGCATGG
CTGGAGCTCTGCTTACATTGCTTTTGTAGCCAGGTGGAGTTGCAGGAGCT
AGTTATGGTATAAACTAAGTCACAGGGAGCTCTGATTTTTGTCTCAGATT
CATGAGGTACTTTGTGGCCTCAACATCAAATGGGAACAATTCACTGATTC
ACCATTCTACACATAGCATCCCTGGTAATGCACACAGTGGGCAGATTACT
AGTTCCAGAATTTTTGTTGTTCCCNNGCGGACCCAACTATGAGCCTTTAA
AATGGCTGGGATTTGCTTCCACAACCTGAACAGCCTTTTAGAGTAGGCAC
ACATGTAGGTATCTGTGGAGAGGCATCAATGCCACCATGAGCCTGCTGCT
GAGGAAAGGGTGGGCTAAAACCATCCCTTCACTAAGAGTACCCCATGAGG
CTTTGCTTTCTAGCTCACAGTCAAATACCCAGGGCATCCAGGAGTGAGGA
AGATTGTCTATCCCTAACGGGGTACTTTTTTACTCAGTTCACATTCTTCC
CAAAGTCTTCATATGGACAACTGACTGGTCCAGACAGGTGAAGACACTCT
CCAAAAGGATAATGAATTCATGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_h19.g1 MSMg01no218_h19.g1 CHROMAT_FILE:
MSMg01no218_h19.g1 PHD_FILE: MSMg01no218_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:31 2005
         (291 letters)



>mm_chr3_99050098_99050788
          Length = 691

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccatagtggacaactgtgcagctgctggagaggagatggacaattagatctgcttgcct 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 489 tccatagtggacaactgtgcagctgctggagaggggatggacaattagatctgcttgcct 430

                                                                       
Query: 61  gtcaatgtcaggcatggctggagctctgcttacattgcttttgtagccaggtggagttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gtcaatgtcaggcatggctggagctctgcttacattgcttttgtagccaggtggagttgc 370

                                                                       
Query: 121 aggagctagttatggtataaactaagtcacagggagctctgatttttgtctcagattcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aggagctagttatggtataaactaagtcacagggagctctgatttttgtctcagattcat 310

                                                                       
Query: 181 gaggtactttgtggcctcaacatcaaatgggaacaattcactgattcaccattctacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaggtactttgtggcctcaacatcaaatgggaacaattcactgattcaccattctacaca 250

                                                            
Query: 241 tagcatccctggtaatgcacacagtgggcagattactagttccagaatt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tagcatccctggtaatgcacacagtgggcagattactagttccagaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)