Query= MSMg01no218_o16.b1 MSMg01no218_o16.b1 CHROMAT_FILE:
MSMg01no218_o16.b1 PHD_FILE: MSMg01no218_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:04 2005
(317 letters)
>mm_chr3_122183429_122184145
Length = 717
Score = 563 bits (291), Expect = e-165
Identities = 306/311 (98%)
Strand = Plus / Plus
Query: 7 attcctgcaagagtccacatggctgcctggcttagccttaccacctaccagcgatttccc 66
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 207 attcctgcaagagtccacatggctgcctggcttagccttaccacctaccagcgacttccc 266
Query: 67 ttggtataaagatgcaagcctcttgggtggcctgaagggagtgcttcagagcaccccaaa 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttggtataaagatgcaagcctcttgggtggcctgaagggagtgcttcagagcaccccaaa 326
Query: 127 gccacccttcctacagttctgcccactggctccttccttctagggtttattgggagctat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gccacccttcctacagttctgcccactggctccttccttctagggtttattgggagctat 386
Query: 187 aggattttattcccactttgcagaaaggcgtggtgcttagaaaaccctgagtctgaactg 246
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aggattctattcccacttcgcagaaaggcgtggtgcttagaaaaccctgagtctgaactg 446
Query: 247 attttaaatttcatgtaccaaggcatctgtgagaaccgcgtctccaggtgtcaacatttt 306
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 447 attttaaatttcatgtaccaaggcatctatgagaaccacgtctccaggtgtcaacatttt 506
Query: 307 cgtgtggttac 317
|||||||||||
Sbjct: 507 cgtgtggttac 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no218_o16.g1 MSMg01no218_o16.g1 CHROMAT_FILE:
MSMg01no218_o16.g1 PHD_FILE: MSMg01no218_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:04 2005
(286 letters)
>mm_chr3_122263080_122263765
Length = 686
Score = 522 bits (270), Expect = e-153
Identities = 282/286 (98%)
Strand = Plus / Minus
Query: 1 actaggtataaaatttactgttgataaattttgttctaattgtatgtgaaaagtagatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actaggtataaaatttactgttgataaattttgttctaattgtatgtgaaaagtagatgt 322
Query: 61 tattattttaaaaccacagacttttctgtattctggattcactaggtataaaatttactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattattttaaaaccacagacttttctgtattctggattcactaggtataaaatttactt 262
Query: 121 ttgataaattttgttctaattgtatatgaaaagtagatgttattattttaaaaccacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgataaattttgttctaattgtatatgaaaagtagatgttattattttaaaaccacaga 202
Query: 181 cttttctgtatgtttattattagtgttattgtcttcgtttgggcttttattgctgtgaag 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 cttttctgtatgtttattattagtgttattgtcttagtttgggcttttattgctgtgaag 142
Query: 241 agatacctttaccaaggcaactcctataaaagcaaatatttaattg 286
||||||| | ||||||||||||| ||||||||||||||||||||||
Sbjct: 141 agataccatgaccaaggcaactcttataaaagcaaatatttaattg 96
Score = 172 bits (89), Expect = 2e-47
Identities = 98/101 (97%)
Strand = Plus / Minus
Query: 91 ttctggattcactaggtataaaatttacttttgataaattttgttctaattgtatatgaa 150
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 391 ttctgaattcactaggtataaaatttactgttgataaattttgttctaattgtatgtgaa 332
Query: 151 aagtagatgttattattttaaaaccacagacttttctgtat 191
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aagtagatgttattattttaaaaccacagacttttctgtat 291
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
