BAC Information

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BAC

Clone NameMSMg01-231F10
Chromosome3 (Build37)
Map Location 28,962,685 - 28,962,970
singlet/doubletsinglet
Overlap genenone
Upstream genePld1, Tnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream gene6130401L20Rik, LOC100040676, Evi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231F10.T7 (MSMg01no231_f10.b1)MSMg01-231F10.TJ (MSMg01no231_f10.g1)
ACCAG398186AG398187
length721735
length of high quality
(start - end)
320 (46 - 365)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no231_f10.b1 PHD_FILE: MSMg01no231_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:36 2005CHROMAT_FILE: MSMg01no231_f10.g1 PHD_FILE: MSMg01no231_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTCTGGCTGGGAGTGAGTGCCAGCAGGGAGAGACAAGGCCTTT
GTAGCGGTTTGAATAGGTTTGGCCCCCATAGACTAGTGTATTTGACTGCT
TAGCCTATAGGGAGTAACACTATCATTACGTCTGGCCTTGTTAGAATAGG
TGTGGCCTTTTGGAGGAAATGTGTCACTGTTTGCCTTCAGAATAAGATGT
AGGACTCTCAGCTCCTCAAGCACCATGCCTGCCTGGACACTGCCATGCTT
CTGACCATGATGATAATGGACTGAACCTCAGAACCAGTAATCCATCTCTA
ATTAAATGTTGTACTTTATACCACCCGCCCAGATCAAGGATCTCTTCACA
GCAGTGAAAACCCTAACACAGCTTTCTCTGAGTATCTTAGTATTACAGCT
TTTTTAAGATGAAGGCTTTCTCCAATGAGTTTCAGTGAACAGCGCTCTGA
GACAATCTTAGCTTGTGCATATTTTTTTTATTTGGNGTGGGCTTGTGTTG
ATATGCTATATTCAGGGTGAACCAGGGTTATATATGGACTTTGTAAAGTG
GGAAGGAGTCTAATTGAAATCATTGGCTGGAGTTTAAAGTCCTGTGAATG
TCACATCTGTATGGAAAGGCTTTCCCGGACCCCCAGGTACTTGCGGGGAA
AGGTTCTTATCATGCAAAAAG
TGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTAT
ATATATTGGATATTAGTCCCCTATCCGATTTGGGATAGGTAAAGATCCTT
TCCCAATGTGCCTCCCAACTAAATTTATTTTGAGCTTTTTGAGAGAAGAC
ACAGAAGCTGGATATGGTGGTTTATACCTAAAATCTTAGCATTTGGAAAA
GGCACTGAGACAGGAGAGTTGCGAGTTCCAGGCCAATCTGACCTGAACCC
ACTATGTAGTATACTTTCTACCTTTCACACCACCTTATATCTTTCCAAGC
ACCTGAGGGTGTTTGGTGACGCCCTATTGAATAAGTAAAATATTTTAATT
AAAATTAAATTTTCTAACAACCAACTTAGAAAACTAAATGACCAATCAAT
CAGTTTCATGTGCTGTGGTTAATACTTTGGTTAATACACACACACACACA
CACACACACACACACATATATGAATACCTATAGTGTTTCTTTCTTTTGGT
TAAAATATAAACACAATTCCTTCTTAAGAAATACAATCCTTTGAAGGCAA
AAAGACTTATGGAAGGTTTTCTCTGTAATTAAGGTAGCCCTCTCCTTGCC
AATTAGTTTAGAGGAAGGTTAGGAATTAACCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_f10.g1 MSMg01no231_f10.g1 CHROMAT_FILE:
MSMg01no231_f10.g1 PHD_FILE: MSMg01no231_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:36 2005
         (291 letters)



>mm_chr3_28962351_28963041
          Length = 691

 Score =  516 bits (267), Expect = e-151
 Identities = 282/287 (98%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgttcagctctgagccccattttttaatggggttatttgattttctggagtccacctt 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 620 tttgttcagctctgagccccattttttaatggggttatttga-tttctggagtccacctt 562

                                                                       
Query: 61  cttgagttctttatatatattggatattagtcccctatccgatttgggataggtaaagat 120
           ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 cttgagttctttaaatatattggatattagtcccctatctgatttgggataggtaaagat 502

                                                                       
Query: 121 cctttcccaatgtgcctcccaactaaatttattttgagctttttgagagaagacacagaa 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctttcccaatctgcctcccaactaaatttattttgagctttttgagagaagacacagaa 442

                                                                       
Query: 181 gctggatatggtggtttatacctaaaatcttagcatttggaaaaggcactgagacaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctggatatggtggtttatacctaaaatcttagcatttggaaaaggcactgagacaggag 382

                                                          
Query: 241 agttgcgagttccaggccaatctgacctgaacccactatgtagtata 287
           |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttgcaagttccaggccaatctgacctgaacccactatgtagtata 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)