BAC Information

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BAC

Clone NameMSMg01-231L21
Chromosome3 (Build37)
Map Location 31,218,239 - 31,218,611
singlet/doubletsinglet
Overlap genenone
Upstream geneMds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1, Gpr160, Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14
Downstream geneLOC625125, Kcnmb2, LOC665514
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231L21.T7 (MSMg01no231_l21.b1)MSMg01-231L21.TJ (MSMg01no231_l21.g1)
ACCAG398466AG398467
length735734
length of high quality
(start - end)
377 (45 - 421)294 (73 - 366)
definitionCHROMAT_FILE: MSMg01no231_l21.b1 PHD_FILE: MSMg01no231_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:06 2005CHROMAT_FILE: MSMg01no231_l21.g1 PHD_FILE: MSMg01no231_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATAATCAGTATGTCTCTAAGCTGGCCTAATACTCCATGCCCTTAG
CTGTGTGTTCATTGTGATCTTGGACCTCTTCCCCATGTAACTTAATATAG
GTTTTAGCAAAATTCAAGACTTGATGTGGCCTCTTGGATCAGCCCCCATG
ACGGCTTGTTGCTTTCTAGGTTTGATCCCACAATCGCACTTGGAATCATT
CACACAGAAAAACACAGACTAGTGACTGTTTTTTATGTCTTCATCTACAT
TTCTGTACCAGTGGTCAAAGGAAGCTTCATTACTACCTCTTCAAGAAGTG
ATCAAGTAGAGGACATGCGTTTCCCTTCTCTTCTTCTGAGAAGCCATCAC
CTCCCGTACAACATCTATGAACCCCGCTTGGTCTTGTGTCTCTGTACATG
TTCTTAGGGCTCTCAAGCTCTTGATGTGACCACATGATGACAAAGACGAT
GGTGACAGTGTCTATGACTCGCCCATTTCCTGAATCAGCTGCTGCTTGTT
TCTTTATGATCTGCGTTGTATACATTGTGCCAATTAATATATTATCAGAA
GACACACTTTAAGGTATAATAAGAAACAAGGCAAACTTTATCCCATATCA
CCACAATAGCTTGAAGACAAGGATTGTTTTATCCAGAACAGATGCTGACA
ATGGCTGACTTATCAGCAGGTGCCTGTCTTCTTCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGAGAGTGGCCGGCCTCACCTTGATCC
TGAGGTTTGCTCTGTACACTTAACTCTTCCTCAGCTGTGTCATCAACAGA
AAGAGGAGTAGACCGTGACTGTATGGCCATGTGCTAGTGCTACTTTTAGC
TTTCTGAGGACTCTGTATACTGATTTGCATAGTGGCTGCACCAGTTCCTG
TGCATGCCAGCAGTGTGAAAAGGCTCCTCGGGCCTCACATGCTCACCAGC
ACTAGGTCTCATTCACTGTCCTCTTGATGACTAAGCATACTGGGTTTATT
TATGTGTTTATTGTTTTTTTTACCCCCACTACCGTCTGTTCATTTAATCA
TCTCATTTATCTTTCGGCCCCCCCTCTTTATAATAAAATTTAACATTTTG
AGTTTTTATGTGATCTGGATATTAATCCTCTATCAGATATATAATTAGCA
TTTTTTTCCATTTTGTAGATTTTTTTCCTCATCTTTTTCCTTTTCTTTGC
CTTACAGAAACTTTTCAATTTCATGTCTTTAAATCAATCAATTCTTGGTA
TTCTGTGTGCTATTGGGGTCTTTATTAGAAAGTCCTTGCTACATTCATGT
TATGGACTGTTTTTGCCATGTTTTCCTTGAACAGTTTCATAGGGTGGGCC
CTTATACAAGGTATCTGATTCAGTTTGAATTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_l21.b1 MSMg01no231_l21.b1 CHROMAT_FILE:
MSMg01no231_l21.b1 PHD_FILE: MSMg01no231_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:06 2005
         (377 letters)



>mm_chr3_31218035_31218811
          Length = 777

 Score =  683 bits (353), Expect = 0.0
 Identities = 368/373 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaataatcagtatgtctctaagctggcctaatactccatgcccttagctgtgtgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaataatcagtatgtctctaagctggcctaatactccatgcccttagctgtgtgt 264

                                                                       
Query: 65  tcattgtgatcttggacctcttccccatgtaacttaatataggttttagcaaaattcaag 124
           |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcattgtgatctgggacatcttccccatgtaacttaatataggttttagcaaaattcaag 324

                                                                       
Query: 125 acttgatgtggcctcttggatcagcccccatgacggcttgttgctttctaggtttgatcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acttgatgtggcctcttggatcagcccccatgacggcttgttgctttctaggtttgatcc 384

                                                                       
Query: 185 cacaatcgcacttggaatcattcacacagaaaaacacagactagtgactgttttttatgt 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacaattgcacttggaatcattcacacagaaaaacacagactagtgactgttttttatgt 444

                                                                       
Query: 245 cttcatctacatttctgtaccagtggtcaaaggaagcttcattactacctcttcaagaag 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 cttcatctacatttctgtaccagtggccaaaggaagcttcattactacctcttcaagaag 504

                                                                       
Query: 305 tgatcaagtagaggacatgcgtttcccttctcttcttctgagaagccatcacctcccgta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgatcaagtagaggacatgcgtttcccttctcttcttctgagaagccatcacctcccgta 564

                        
Query: 365 caacatctatgaa 377
           |||||||| ||||
Sbjct: 565 caacatctgtgaa 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)