BAC Information

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BAC

Clone NameMSMg01-232C07
Chromosome3 (Build37)
Map Location 30,711,523 - 30,711,808
singlet/doubletsinglet
Overlap geneTloc1
Upstream geneLOC100040676, Evi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7
Downstream geneGpr160, Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14, LOC625125
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232C07.T7 (MSMg01no232_c07.b1)MSMg01-232C07.TJ (MSMg01no232_c07.g1)
ACCAG398744AG398745
length724727
length of high quality
(start - end)
245 (127 - 371)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no232_c07.b1 PHD_FILE: MSMg01no232_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:34 2005CHROMAT_FILE: MSMg01no232_c07.g1 PHD_FILE: MSMg01no232_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAAATGTTCTAGGGAGGGGATATTTGTACGTCTGAAACCCTGGG
CTTGCAGGTTCAGGTGATTTTCTCTAAGAACACATTTCACATATGAGTCA
CAACTCATTGCTGGGGTAGTTCAATGTACCTGTGCCACTCCACTGAGAGA
GAACTTTTGGGAGATTGTTCTTGGTATCCTTGGGGCTTTCCATCAAAAAA
GTTTCCCTTTCTTGGTCTTATTCTCCCTTATTCTTGAAGTTTTCCTTATT
CCTGATCATAGTTCCCTGTATTATATCTTTGCTATGAATACAGCTGTATG
CTGAGCCTCGTGTCTTCCCCTGACCCAATGAAACTGGAATGGTGCTGTGG
ACCCCAGTACTGTACCCCCCCAAGAGCTGGTTTACCTGAGTGATTCATTT
GGGGAAATTCTACGATATCCCGTCACTGCCAAGCACCTTCCTCCACTTGC
CAGCCATGACGGGAAGAAATTCTAGATCTGGTACACCATGACATAAGGCT
AGGATAGATGCATGACCCTTAGGATTCCTAAAAGAGCATTAAGTCCTGTG
TCGAACGAGTTGCTGTACGTTGGCCTAAGTGTACCTCTGACTAATTCATT
CTTTCTCCAGACTCTTCACCCTCATACATACACATTTCCTTCTCATCCCA
TTTATTCGTTATCCCGACCTTTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCAATGGAATTGGTAGGCCAA
AAGATACAAGCATTTAAAATTTGCCCCCGACTTTGTTTGGCTGTGTCCAT
GAAAAGGAACATAAGGGAAACCCTACAGGATTTACAGGAGCGGTGTGCTA
CCACCTACAATGTGAAGGCACTGCCAAACTGCCTGCTGGAAAGAAAGAAA
AAGGAAGGCACCATCATCAATTGTTGGAGTGTTCCCTCCACCCCAGGACT
TCACTGTCAGTTTCTGAAATCTTATTCTTTGTTACTTCACTCTGTATCTG
ATTTATCCTTAATCTTTTGAATGCCCCCTGTGTTTTCCTGTGAGCTACAT
TTATCTTGTTCTACCACCCCCACACCTTAAAAATGATTTAGCTGCTGCAA
ATAATTTGAGTTTGTTACTTATCTTCTAACTTTATTTAAAATATCCTCTT
AAAGAGCTCTTACTTTGTTTTAAATTTTAAAGTATTTTTTGAGGCCCTGC
ATTTGTCCTCTAAAGTTTAGAGTATACTAAAAAGCTACTTATATTCTCCT
ACTTACCAAGAATTAATCCCATGACAAATGTTTTAATGTGATCTGGGTCA
TTAGATCCACACATAAACCTAGAAGAATCTAGAAACCTCAATGTTTATCA
GTTCTAAGGTCACATTAGTAATAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_c07.g1 MSMg01no232_c07.g1 CHROMAT_FILE:
MSMg01no232_c07.g1 PHD_FILE: MSMg01no232_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:34 2005
         (288 letters)



>mm_chr3_30711269_30711956
          Length = 688

 Score =  480 bits (248), Expect = e-140
 Identities = 276/292 (94%), Gaps = 12/292 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttcaatggaattggtaggccaaaagatacaagcatttaaaatttgcccccga------ 54
           ||||||||||||||||||||||||||||||||||||||||||||||      ||      
Sbjct: 540 ctttcaatggaattggtaggccaaaagatacaagcatttaaaattt------gaatattg 487

                                                                       
Query: 55  ctttgtttggctgtgtccatgaaaaggaacataagggaaaccctacaggatttacaggag 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctttgtttggctgtgtccatgaaaaggaacataagggaaaccctacaggatttacaggag 427

                                                                       
Query: 115 cggtgtgctaccacctacaatgtgaaggcactgccaaactgcctgctggaaagaaagaaa 174
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 cggtgtgctagcacctacaatgtgaaggcactgccaaactgcctgctggaaagaaagaaa 367

                                                                       
Query: 175 aaggaaggcaccatcatcaattgttggagtgttccctccaccccaggacttcactgtcag 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 366 aaggaaggcaccatcatcaattgttggagtgttccctccaccccaggacttcagtgtcaa 307

                                                               
Query: 235 tttctgaaatcttattctttgttacttcactctgtatctgatttatccttaa 286
           |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 306 tttctgaaatcttaatctttgttacttcactctgtatctgatttatccttaa 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)