BAC Information

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BAC

Clone NameMSMg01-232F09
Chromosome3 (Build37)
Map Location 64,365,971 - 64,366,285
singlet/doubletsinglet
Overlap gene4930518C23Rik, EG667069
Upstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060
Downstream geneLOC100040918, 4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232F09.T7 (MSMg01no232_f09.b1)MSMg01-232F09.TJ (MSMg01no232_f09.g1)
ACCAG398877AG398878
length784736
length of high quality
(start - end)
319 (46 - 364)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no232_f09.b1 PHD_FILE: MSMg01no232_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:48 2005CHROMAT_FILE: MSMg01no232_f09.g1 PHD_FILE: MSMg01no232_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:48 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGAAGCATTCACTGTTTTAGTAAATGATGACACAATGAAAGTAA
CATTAGATTAAATTCACTCTAGCCTCTGAATTCTATATAAAGTAGTCTTG
TAAGGGGTTCTCAAACTAGGAGAATTTGCATTTCATGAAGAAAGTGTAAA
CTGCTTGGAGAACATTGGAACTGCATGTGACTAAGGGAACTGTGGAATGT
TAATGGTGGAAATTAATTATATAGAACTAATTTTAAAGAAATATGTTAAA
TATATAAAACTAAAATTTATATATGTGTGTATATATATATATATATATGT
GTGTGTGTGTATGTTTGTTCCCCCCCCCCCCCCCTTTATTCTTTAACTAA
ATCCTTATTCCTATTTTTTTCCCCCCCCCACAAATAAAAACTTCCATCTT
TCCGTCACTCTCCCCCCCCTTTCTCCCTCCCCTTACTTTTTCCTCTTCAT
TTATACCCTTTTCCCCTTCTCCCCCCCCCCACCCTCTTTCCCTTTTTCCT
TTCTTCCTTTTTCCCCTTTCTTTTTCCCTTCCTTTTTCCCCTTTTCCCCC
CCCCTTCTTTTTTTTTTTTTCCTTTTTTTTCCACTCCCCTTTTTTTCCCC
CCTTTTCTCTTCCCCCCATTTTCTTACTTCCCTTTTCTCACTTCCTCTAC
TCCCTTTCCCTTTCTTTCCCTTCACACCTTTTCCCTTTTCTTACCTTTAT
TCCCCCCCTTTTTCCCCTTTTTCCCCTTTCTTTC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCATGATGTACACCCTAGCAAG
GATCCAAATGATGTCTTGACCATTGAATTCTGGCAAACTGCTTTTAACTG
TACCTGGCCCAACAGCAGTGTGCCTTACAATGTGGACCACAGAGTGAATA
TGACTGGTAAAGAAAACAGACTGTATGACATGTCTGATCAGCTCTGCACT
GGAGAGGAGAAGCTGGAAGATCTGAAAAACACCTATCTGGATACATCTCA
GCTAATAATCACAAACAATGTCAGATAAGCTGTATATCTAATGGCTTATG
CCCTGGATCGTTTATTTTCTTGCCCACCCCACCCCCAAGAACAGAGGAAT
GATACAACATGTTCACATATACCCCACTTTGAGACCAAAGAGGTACGTTA
TTTGACCCTATTATACAGCATGGGGTAAAACCAAGGTTTGCTGACAATTA
CATACCTTTGAAATTGCTGATTTGCTTTCATATGATTTTAGAACATCAAA
ATTTGTCTGGATGACTTGATTGTTCACTTTACATTCCCATTTTTTTTTAC
CCAATCACTAGGTTTGTTGTCATTAATAAGAAATCTCACATAAGATAAAA
TAATGCCTTTTACAAAATATGCTTTTTTTTCTTCCCAGATATGAAACCTA
TCAGTATCTAATAGTTAAGCATGAGTACCGACTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_f09.b1 MSMg01no232_f09.b1 CHROMAT_FILE:
MSMg01no232_f09.b1 PHD_FILE: MSMg01no232_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:48 2005
         (319 letters)



>mm_chr3_64365767_64366485
          Length = 719

 Score =  588 bits (304), Expect = e-172
 Identities = 313/316 (99%), Gaps = 2/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgaagca-ttcactgttttagtaaatgatgacacaatgaaagtaacattagat 63
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgaagcagtt-actgttttagtaaatgatgacacaatgaaagtaacattagat 263

                                                                       
Query: 64  taaattcactctagcctctgaattctatataaagtagtcttgtaaggggttctcaaacta 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taaattcactctagcttctgaattctatataaagtagtcttgtaaggggttctcaaacta 323

                                                                       
Query: 124 ggagaatttgcatttcatgaagaaagtgtaaactgcttggagaacattggaactgcatgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggagaatttgcatttcatgaagaaagtgtaaactgcttggagaacattggaactgcatgt 383

                                                                       
Query: 184 gactaagggaactgtggaatgttaatggtggaaattaattatatagaactaattttaaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gactaagggaactgtggaatgttaatggtggaaattaattatatagaactaattttaaag 443

                                                                       
Query: 244 aaatatgttaaatatataaaactaaaatttatatatgtgtgtatatatatatatatatat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaatatgttaaatatataaaactaaaatttatatatgtgtgtatatatatatatatatat 503

                           
Query: 304 gtgtgtgtgtgtatgt 319
           ||||||||||||||||
Sbjct: 504 gtgtgtgtgtgtatgt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)