BAC Information

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BAC

Clone NameMSMg01-232H04
Chromosome3 (Build37)
Map Location 79,289,205 - 79,289,516
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741
Downstream geneLOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik, EG626797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232H04.T7 (MSMg01no232_h04.b1)MSMg01-232H04.TJ (MSMg01no232_h04.g1)
ACCAG398953AG398954
length706710
length of high quality
(start - end)
318 (46 - 363)551 (76 - 626)
definitionCHROMAT_FILE: MSMg01no232_h04.b1 PHD_FILE: MSMg01no232_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:56 2005CHROMAT_FILE: MSMg01no232_h04.g1 PHD_FILE: MSMg01no232_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTTCCCCAGCAGTTTGGGTACAAGCACATGTGGCTATCCCTG
GCTTCCTGTGGACACTGGGAAGTGAACCTAGGTCCCTAGGCTTGTAGGCA
CTCTGGCTGACTTATGTCCATAGCCCTTACTCAGCAACGTCTTCCCTTTA
TCCGTTTCATTTACAAATATAGTATCTTCTTTTAATAAAGATTCCCCATT
TTCCATTTTTTTAAATGGAAGATTTTGAGCCCTTCCCCTGTGTAAGGGGC
TTTGTGCCTCTTTTTTCGTTTTGCTGCTGTGCTCTGGCTACATGAATAAC
CCTTTTTTATGATTGTTGAACCCCCGCCCATGTACCCTGTTTACATGCAA
ACTCATAGACTGTGCTGCCCCAATACTTAGAAAATTAATTTAAAATATAT
ATCAAAATATATAAGGTTCAAGCCATTTGGTAAAATTTTTACATGTGTGT
ATTTTTCTTAGGGGTGAGAAGTGTTGCTTGTTTGTTTCATACTTGAGACA
CAGTCACTGTACGTAGTCTAGGCTAGCCTGGAACTCACTGTATATCCTGT
GCTGGCCTTGAACTCTTTCCTTGGCTTCCGTAGTCACTGGGACCATAGGC
CCACACCACCAGGGCCAGATTGCGTGTGGTAGCAGCACAGATCCTGCTGT
CACAAN
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATAAGGCACTGAGGATTTTACCTA
AGAAGCACAGCGTCTTGGCCTATCGAATGGACAGAGCTAGGAATATGGCT
CAGCAGTTGAGCATTTGCTATACCCATGGGGACCTGGGTCCAATTCCCAG
CACCCATGTGAAGTCTCTCACAATGATCATTAACTCCAGTTCCAGGGCAT
CTGACACCCTCTTCTGGCTCCTTGGGTAAATGGCATGCATGTGGTACATA
CACATGCATTTAAGCAAAACGTGTACAGTTTTTTAAAAAATTCCTTGGGG
CTGGAGAGATAGCTCACTCACTGCTCTTGGAGAGGACCAGAGTTTAGTTC
CAATCACCATGTGAGGAACCCACAACTGCCTTTACCTCTAGTTCCAGCGC
CCTCTTCTGGCTTCCAAAGGCAACATTGCAAACACATACACACACACACG
TTTTATATATATATATATATATATATATATATAACACATACACTATGACC
CTTGGGTGATGAACTGCTTTTTCAGCGATATTATATATATATATATATAT
ATATATATATATATATATATATATATACATATATATATATATACATACAC
CCCTTTTCCCCCCCCCCCCCCCGCGTGATAGCTTTTTATATACCCTACAC
ACCATCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_h04.b1 MSMg01no232_h04.b1 CHROMAT_FILE:
MSMg01no232_h04.b1 PHD_FILE: MSMg01no232_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:56 2005
         (318 letters)



>mm_chr3_79289002_79289716
          Length = 715

 Score =  563 bits (291), Expect = e-165
 Identities = 308/315 (97%), Gaps = 3/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctgttccccagcagtttgggtacaagcacatgtggctatccctggcttcctg 63
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaattctctgttccccagcagttcgggtacaagcacatgtggctatccctggcttcctg 456

                                                                       
Query: 64  tggacactgggaagtgaacctaggtccctaggcttgtaggcactctggctgacttatgtc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tggacactgggaagtgaacctaggtccctaggcttgtaggcactctggctgacttatgtc 396

                                                                       
Query: 124 catagcccttactcagcaacgtcttccctttatccgtttcatttacaaatatagtatctt 183
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 395 tatagcccttactcagcaacgtcttccctttatccatttcatttacaaatatagtatctt 336

                                                                       
Query: 184 cttttaataaagattccccattttccatttttttaaatggaagattttgagcccttcccc 243
           |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 335 cttttaataaagattccccattttccatttttt---atggaagattttgagcccttcccc 279

                                                                       
Query: 244 tgtgtaaggggctttgtgcctcttttttcgttttgctgctgtgctctggctacatgaata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgtgtaaggggctttgtgcctcttttttcgttttgctgctgtgctctggctacatgaata 219

                          
Query: 304 acccttttttatgat 318
           |||||| ||||||||
Sbjct: 218 acccttctttatgat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 715
Length adjustment: 9
Effective length of query: 309
Effective length of database: 706
Effective search space:   218154
Effective search space used:   218154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)