BAC Information

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BAC

Clone NameMSMg01-233L09
Chromosome3 (Build37)
Map Location 154,612,420 - 154,754,496
singlet/doubletdoublet
Overlap geneTnni3k, Fpgt
Upstream geneSlc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180
Downstream geneLrrc44, EG383956, Scp2-ps1, EG668902, LOC624519
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233L09.T7 (MSMg01no233_l09.b1)MSMg01-233L09.TJ (MSMg01no233_l09.g1)
ACCAG399825AG399826
length725725
length of high quality
(start - end)
315 (46 - 360)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no233_l09.b1 PHD_FILE: MSMg01no233_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:28 2005CHROMAT_FILE: MSMg01no233_l09.g1 PHD_FILE: MSMg01no233_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,612,420 - 154,612,728)(154,754,214 - 154,754,496)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATATGTATTCCTGAAGGTCAAGTGGAAATTAAAAACTTAAGTT
AAAATTTGGTGGAGAAGATGGTTGAGGCATGGGAAAACCTTGGGAAGGAA
TACAGAATGCCAGATGTGTTGAGGAATGAAAGAGGAGATTTTATTACCAT
TCTATTAACAGATGCTGCTCCTCTGTGTCATTATACAGAACAGTAAATCA
AGTTTGGAACATGCTTGACAGAGTGGACCCTGAGAAAATTCGAGTGACCT
AGTTAATGTGGCAATGGTTGACATGTCACTCTTATGACAAAAGTAACTGC
CCACAGTGTTTGTTTTTCACCCACCCCACCGCCCATGATATCAAGCAGGT
CTTTTTCCTGTAGGCGCCCGCGTGCTGAAAGCAGACTATAACTAGAGAAA
TAGGCGTAAGTGATATTAAGAGAAAAATGAGTTAAGAAGGTGGTAATATG
AATCAGGCAAGATATCAGAAGGTTTTGAACTAACACAGTGGTGGTAAAAA
TAAAGAGGAAAGGATAGACTCAAGATATACTGAAGTGGATTGAGGGGACT
TTTATTCATATGGTCTGTGTGCTGGGATAAGAAAACGAGGGGGAAAAGGT
CACAGATATATATATACACACGTGCGTGTGCGTGTGTGTGTGTGTGTGTC
CGCCCCCCTTATCCTCCCCTTATCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGGATGTGGTTGCAATAACAGCA
GCTGATGAAAAGCAGGAGCTTGCTTACAAGCAACAGTTGTCAGAGAAGCT
GAAGAAAAGGGAATTGCCTCTTGGAGTTCAATACCATGTTTTTCCGGATC
CTGCTGGGACCAAAATTGGTACACATTTCATGGGGGTGCTTATAAAGGAC
TCTGGACAAAAATAATAATTGAAAGATAATTTTTCTTTGTTTATAGTTTA
TAAACTCTTTTTCTGTACACATGGCCTTTAAAAACTTTAAGATCTGAAAC
TTAACTTTTATTTTGATAAAACGCCCCCCCCGAGGTTCTGAGCCCCTGCG
ACTTACAGAGAAACTTGCCCAGACCTTATTTTAAAGATTTTTTTTTTTTT
TTGCCTCAGTACAATTTACACTGGAATTTGCTGGAAGTTCTCTTAAGATC
TTTCCCAACTGAGCAACTGAGTCATTTCATGAAGTAGTTTGATGAAGAAA
ACACATCAGGAAGCTGATGTATATATATTCTTGGCCTCTTAGGACCAAGT
TATGGGAAACAGACAAACAAGGACCAGTTACTTGAAGTATCGTAGAATAT
TTACTTAAACCCTGGAGAGTTCAACTTTGCCATCATTGCAGATATATCAA
TTACGTGTCACCTTTGATTCCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_l09.b1 MSMg01no233_l09.b1 CHROMAT_FILE:
MSMg01no233_l09.b1 PHD_FILE: MSMg01no233_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:28 2005
         (315 letters)



>mm_chr3_154612216_154612930
          Length = 715

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatatgtattcctgaaggtcaagtggaaattaaaaacttaagttaaaatttgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatatatgtattcctgaaggtcaagtggaaattaaaaacttaagttaaaatttgg 264

                                                                       
Query: 65  tggagaagatggttgaggcatgggaaaaccttgggaaggaatacagaatgccagatgtgt 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 265 tggagaagatggttgaggcatgggaaaaccttgggaaggaatacagaatgccaggtgtgt 324

                                                                       
Query: 125 tgaggaatgaaagaggagattttattaccattctattaacagatgctgctcctctgtgtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaggaatgaaagaggagattttattaccattctattaacagatgctgctcctctgtgtc 384

                                                                       
Query: 185 attatacagaacagtaaatcaagtttggaacatgcttgacagagtggaccctgagaaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attatacagaacagtaaatcaagtttggaacatgcttgacagagtggaccctgagaaaat 444

                                                                       
Query: 245 tcgagtgacctagttaatgtggcaatggttgacatgtcactcttatgacaaaagtaactg 304
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcgagtgacctagtcaatgtggcaatggttgacatgtcactcttatgacaaaagtaactg 504

                    
Query: 305 cccacagtg 313
           |||||||||
Sbjct: 505 cccacagtg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no233_l09.g1 MSMg01no233_l09.g1 CHROMAT_FILE:
MSMg01no233_l09.g1 PHD_FILE: MSMg01no233_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:28 2005
         (283 letters)



>mm_chr3_154754014_154754696
          Length = 683

 Score =  493 bits (255), Expect = e-144
 Identities = 276/283 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggatgtggttgcaataacagcagctgatgaaaagcaggagcttgcttacaagcaacag 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 483 tgggatgtggttgcaataacagcagctgatgaaaagcaggagctcgcttacaagcaacag 424

                                                                       
Query: 61  ttgtcagagaagctgaagaaaagggaattgcctcttggagttcaataccatgtttttccg 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 423 ttgtccgagaagctgaagaaaagggaattgcctcttggagttcaataccatgtttttcca 364

                                                                       
Query: 121 gatcctgctgggaccaaaattggtacacatttcatgggggtgcttataaaggactctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gatcctgctgggaccaaaattggtacacatttcatgggggtgcttataaaggactctgga 304

                                                                       
Query: 181 caaaaataataattgaaagataatttttctttgtttatagtttataaactctttttctgt 240
           |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 303 caaaaataataattgaaaaataatttttctttgtttatagtttataaactgtttatctgt 244

                                                      
Query: 241 acacatggcctttaaaaactttaagatctgaaacttaactttt 283
           ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 243 acacatggcctttaaaaactttaagatctgaaacttagctttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)