BAC Information

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BAC

Clone NameMSMg01-233L13
Chromosome3 (Build37)
Map Location 16,314,347 - 16,314,657
singlet/doubletsinglet
Overlap geneLOC100040034
Upstream geneLOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3
Downstream geneLOC100040059, EG383936, LOC622737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233L13.T7 (MSMg01no233_l13.b1)MSMg01-233L13.TJ (MSMg01no233_l13.g1)
ACCAG399831AG399832
length685697
length of high quality
(start - end)
319 (46 - 364)207 (426 - 632)
definitionCHROMAT_FILE: MSMg01no233_l13.b1 PHD_FILE: MSMg01no233_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:29 2005CHROMAT_FILE: MSMg01no233_l13.g1 PHD_FILE: MSMg01no233_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGGGTCTGTTTTTCTATACATGGTTCCAATCCACTCTGATAGTT
GTAGAAGGAGCAACTTTGTTTTACTTTTAGAAATACATTATTTATCAGCC
TGTACCTCAAGGGTTGTATTGGGTAAGTGGCATGAATGAGTATGTGCCCA
TGAAGAAGCAGATTTATCCTTCCTTTACATTGGCACTCAGGATGGAGCAA
AATGCTGTGTATAAAAGGACTCATATGAGAACAGAAAAGCCTGAAAGTCA
GTCTTACAGACAGTAGGCTAACTTAGAAAGCAGAGAACAGCTTGATCATA
ACAGCTTTTATATTCAGCATCTGCCCCCCATTGTAATCAGATTTCATTGA
CTGGCATTTTTCATGAACGCAAGGGTTTGGTTTTGCTTCCTTAGGGCTTC
CAGAAAATTCTGGGATAACTGGGGTCTCTAATTCCACCCCAGTAATTTCG
GGGCCAAAACCGGGGGGGTTTTTAAACTTCCCGGGAAATTATTCTTTTGG
GGGGGTCCCCTAAAAAAATTTTTTTAGACTCCCATTTTTGTTCACCCTCC
CCCCCCTTTTCTGGTGGGTCCTTTTCTCAAAAAAATTCCTTTTTTTTTAA
ATCATATTTTTTATCCGTTTTCCTTCCCCCCCCCG
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTGACCAAAAAAGATCTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGATTTATGTCCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACACTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGAAGATGCTGGCGTGGATGTGGAGAAAGATTATCA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGTGTTTTTTTTTAAAATTGGACATAGNACTACGGGAGGATCCTT
TTTTTTTTTCCCCCGNACTATCCCCAAGATACCCCAACTGGTAAGAAGGA
CACATGCTCCACTAAAAAATAAAAACCTTATTTATAATAGCCAGAAGCTG
GAAAAAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACATTCACAAAGGAACTCACACAATATGTACTTCTTGATAAGTGGAT
ATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACCATTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_l13.b1 MSMg01no233_l13.b1 CHROMAT_FILE:
MSMg01no233_l13.b1 PHD_FILE: MSMg01no233_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:29 2005
         (319 letters)



>mm_chr3_16314143_16314861
          Length = 719

 Score =  571 bits (295), Expect = e-167
 Identities = 307/311 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgggtctgtttttctatacatggttccaatccactctgatagttgtagaagga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgggtctgtttttctatacatggttccaatccactctgatagttgtagaagga 264

                                                                       
Query: 65  gcaactttgttttacttttagaaatacattatttatcagcctgtacctcaagggttgtat 124
           ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 gcaaccttgttttacttttagaaatacattatttatcagcctgtacttcaagggttgtat 324

                                                                       
Query: 125 tgggtaagtggcatgaatgagtatgtgcccatgaagaagcagatttatccttcctttaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgggtaagtggcatgaatgagtatgtgcccatgaagaagcagatttatccttcctttaca 384

                                                                       
Query: 185 ttggcactcaggatggagcaaaatgctgtgtataaaaggactcatatgagaacagaaaag 244
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 385 ttggcactcaggatggagcaaaatgctgtgtataaaagaactcacatgagaacagaaaag 444

                                                                       
Query: 245 cctgaaagtcagtcttacagacagtaggctaacttagaaagcagagaacagcttgatcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctgaaagtcagtcttacagacagtaggctaacttagaaagcagagaacagcttgatcat 504

                      
Query: 305 aacagctttta 315
           |||||||||||
Sbjct: 505 aacagctttta 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)