BAC Information

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BAC

Clone NameMSMg01-233L24
Chromosome3 (Build37)
Map Location 126,643,508 - 126,666,734
singlet/doubletdoublet
Overlap geneAnk2
Upstream geneArsj, Camk2d
Downstream geneLOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233L24.T7 (MSMg01no233_l24.b1)MSMg01-233L24.TJ (MSMg01no233_l24.g1)
ACCAG399851AG399852
length694712
length of high quality
(start - end)
335 (43 - 377)270 (443 - 712)
definitionCHROMAT_FILE: MSMg01no233_l24.b1 PHD_FILE: MSMg01no233_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:31 2005CHROMAT_FILE: MSMg01no233_l24.g1 PHD_FILE: MSMg01no233_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,666,402 - 126,666,734)(126,643,508 - 126,643,776)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCATG
AAAACATCTTGCTGCTGTACAGAGTTTTCATGGTATTCCCAACAGTTTTG
ATTTTCCCAAAGAACAATTTTTCCCCTCCATTTTTGGCTAGCGCCCTGGC
AGTGAACCTCAGTAGGAACAGACTTGACAGCCATGTGCTCCCCTGGCACA
AAAGCACCTCCATTGTACACTCTGGGTCTCAGGTTCCTTGCTCTTTGTGA
CCAATGGAGGGGGCAGAACCAAACGCAGTGTGAAACCAAACTTCACCCTG
TGATGCTGGGGTTCTGTGGACACGGTACCTGAAGCTCACTTCTGTTCTTT
CTTTCATTGCTGCTTTGGATGCACTCCCAAGACTTCAACTGCCAACGGCT
CCTCCCCCACTTAATGAGGGAGAAAGATTGATCAGCCGCATCCTTCAGCT
GGGGACTCCTGGAACCAAATTCCTTGGGTAGGAGCGACTTAAAACAAAAT
GATGGCTGCTGTGCCCCATTCTTCTCCTTCTTCTGAGATATGATTTCTCT
TTTCGTCATTGAGCCCATGACATGTCCCTCTCTATGATTTAAACTCTGTA
TAATCTATCTTTAGCGGAACATTTCTGACCCTTGTGGTATGTGACTTTTA
TTTTTGAGTGACGTTTTTATATCTTCTCCCTTACAGTGCTGTGA
NAATTCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCGATCTAATATCT
AATAGTTGCACAAATTAGCTATCGTGGCTTACCCCATATGAACTGGTATG
TTTTCTGATTTCTGGGATAAAATGGGGAATGAATCCCATGTGGTGATTTG
CGGAAACCATCTGCTTCCATATCCCTTTAATGAAGACTTGTAACTGAACA
GAATGTCTAGTTATCTCAGGACTTTCTTTTTATGCTTTTGAAGAAGGAGA
ACAAAACAACTGTCCACTCACTGAATACTTGTTACCCCAGAGAAATCAGA
GATGGGCTACAGAGGTGGATAATCNTATCTCCCCCACCCCTGCCCTGTGG
ACCTGTCAGTCACCACCACGTCCGATCTGAAAGAAAAACAAGGGATTATC
TGAAGCCTGGACTTAAACTGAGGCCAGGAAGATCAATGTCCTATTGACCT
TTGGAAGAAGGCAGGACAAAGGCATATGAGCTTTTGATCCTGCTGGTGGG
ACATTTGCATCTGAGGCAAAGGTTCTGGCTGCCTGTTCCTAAGCAAAGTC
ATGTAGTGCACACTCGCACACAACTAGAATTCATCCAATCCCCTCTCAAC
TGCTGTGGACTGCTGGACAGCATTGGTGAATTCTATGTCGCCTACACTTT
AAGGATAAGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_l24.b1 MSMg01no233_l24.b1 CHROMAT_FILE:
MSMg01no233_l24.b1 PHD_FILE: MSMg01no233_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:31 2005
         (335 letters)



>mm_chr3_126666201_126666935
          Length = 735

 Score =  629 bits (325), Expect = 0.0
 Identities = 331/333 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   atccatgaaaacatcttgctgctgtacagagttttcatggtattcccaacagttttgatt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 atccatgaaaacatcttgctgctgtacagagttttcatggtattcccaacagttttgatt 475

                                                                       
Query: 62  ttcccaaagaacaatttttcccctccatttttggctagcgccctggcagtgaacctcagt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttcccaaagaacaatttttcccctccatttttggctagcgccctggcagtgaacctcagt 415

                                                                       
Query: 122 aggaacagacttgacagccatgtgctcccctggcacaaaagcacctccattgtacactct 181
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 414 aggaacagacttgacagccatgtgctcccctggcacagaagcacctccattgtacactct 355

                                                                       
Query: 182 gggtctcaggttccttgctctttgtgaccaatggagggggcagaaccaaacgcagtgtga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gggtctcaggttccttgctctttgtgaccaatggagggggcagaaccaaacgcagtgtga 295

                                                                       
Query: 242 aaccaaacttcaccctgtgatgctggggttctgtggacacggtacctgaagctcacttct 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aaccaaacttcaccctgtgatgctggggttctgtggacacggtacctgaagctcacttct 235

                                            
Query: 302 gttctttctttcattgctgctttggatgcactc 334
           |||||||||||||||||||||||||||| ||||
Sbjct: 234 gttctttctttcattgctgctttggatgtactc 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no233_l24.g1 MSMg01no233_l24.g1 CHROMAT_FILE:
MSMg01no233_l24.g1 PHD_FILE: MSMg01no233_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:32 2005
         (270 letters)



>mm_chr3_126643308_126643977
          Length = 670

 Score =  505 bits (261), Expect = e-147
 Identities = 267/269 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggattatctgaagcctggacttaaactgaggccaggaagatcaatgtcctattgaccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggattatctgaagcctggacttaaactgaggccaggaagatcaatgtcctattgaccttt 260

                                                                       
Query: 61  ggaagaaggcaggacaaaggcatatgagcttttgatcctgctggtgggacatttgcatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaagaaggcaggacaaaggcatatgagcttttgatcctgctggtgggacatttgcatct 320

                                                                       
Query: 121 gaggcaaaggttctggctgcctgttcctaagcaaagtcatgtagtgcacactcgcacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggcaaaggttctggctgcctgttcctaagcaaagtcatgtagtgcacactcgcacaca 380

                                                                       
Query: 181 actagaattcatccaatcccctctcaactgctgtggactgctggacagcattggtgaatt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 actagaattcatccaatcccctctcaactgctgtggactgctggacagcattggggaatt 440

                                        
Query: 241 ctatgtcgcctacactttaaggataagtc 269
           |||||| ||||||||||||||||||||||
Sbjct: 441 ctatgttgcctacactttaaggataagtc 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)