BAC Information

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BAC

Clone NameMSMg01-233N17
Chromosome3 (Build37)
Map Location 107,939,503 - 107,939,763
singlet/doubletsinglet
Overlap geneGnai3
Upstream geneKcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2
Downstream geneGpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233N17.T7 (MSMg01no233_n17.b1)MSMg01-233N17.TJ (MSMg01no233_n17.g1)
ACCAG399926AG399927
length697657
length of high quality
(start - end)
310 (46 - 355)265 (77 - 341)
definitionCHROMAT_FILE: MSMg01no233_n17.b1 PHD_FILE: MSMg01no233_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:39 2005CHROMAT_FILE: MSMg01no233_n17.g1 PHD_FILE: MSMg01no233_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTGTCTTCCTTCTATCAAAGCTGACACTCCCGTCCCCACTCCTA
CTGCCATACCTATTCCCATGAATGCAGCCAGGGTTAAAGTAATTGGTTCT
CTTTTTGACCGCCGGCCAGCATAGCTTTCTTCTAAACTGGATGCAGGGTG
ATAATATACGCGGGGTAACAGCTGGATCATGACACAAAAATCATGAGATG
AATTAAAAACCTTAGTTGATACACAGGGAGTAAGTCCTGTATTGCAAGCC
CACCATCCAACCGGGGAAGGTACAAGATAGTAATTAGCTTCCGTTCTGGA
CACGTATTGATTTTGTCCGCACCACCTGTTTGTGAGTGGAAGGTGGGGTA
CCTATACAGAGACCTGGATTCCTCGCGGATACTTCAGTCAGGGTCAGTTT
TTGTCCTGTACCCCAAGAGCAGGAAGTATGGCTGCTGGTTCTGTTGAAAT
CTCCATTGAAGGCGATTCCTTCATAATAAGGCGGACCCAAGGACAGGCAT
AGCCAGCAGTCCTCAGTAGCGCTTGGATCAGTTCTGTTAAGGGCATACAA
GGCTCCTCTCACTAGGTTACACATCCTCTGTCTTGAAGGAATCGCGCGGG
TAATAGTTAGAGGTACCTGAGGAGCGCGAGGTTGTTTGCCCTCCCCG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAGTACTAGACAGACACACTG
CAGTACACAGATGTGCAATCAGACAAACGTGCATATGCATAGAATAAGTA
AATGAAAAAATTTAGGATAAAATATTTTAATAAGCTTTTTATTTTGGATT
AACTTGACTCTTCTGCTAGTTTTCTAAAGAATGTTACATTTGTCACCTCA
AGAAATTAATGCTGCTATATAAATGTTCATTTAACTTTTAAATTTTATCA
GTTTTCCCATTAAGGTTCTTTTTAGTGTCTAGGATCACTCTACGATGCGG
CGTTCTTATTTTTTACCCCCCCCCCCCCTCCCTGNTTCCAATATGGACCT
CTAGCGGAGTGNNCGATATACTAAGACCAAANNNNNNNNTNNNTAAAATT
CCCATTTCTCCCCCTAAACAAGAACCCATAAAATTTTAAAATAGGTTGAA
AGGGGGCCTCAGTTTCCTCCCCCCCNTTTTTCCTTCGCTTTCTCTCCCCC
TTCTCATATTATCCCCCCTTCCTATTTCCCCCCCTCCACATCATCTCCCC
TCTTCCTCTTCTCTCTCACTTCTTCCTCCCCCCCTTATTATTACTTTCTT
CCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_n17.g1 MSMg01no233_n17.g1 CHROMAT_FILE:
MSMg01no233_n17.g1 PHD_FILE: MSMg01no233_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:40 2005
         (265 letters)



>mm_chr3_107939303_107939967
          Length = 665

 Score =  482 bits (249), Expect = e-140
 Identities = 258/261 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgagtactagacagacacactgcagtacacagatgtgcaatcagacaaacgtgcatat 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 461 tctgagtactagacagacacactacagtacacagatgtgcaatcagacaaacgtgcatat 402

                                                                       
Query: 61  gcatagaataagtaaatgaaaaaatttaggataaaatattttaataagctttttattttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gcatagaataagtaaatgaaaaaatttaggataaaatattttaataagctttttattttg 342

                                                                       
Query: 121 gattaacttgactcttctgctagttttctaaagaatgttacatttgtcacctcaagaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 341 gattaacttgactcttctgctagttttctaaagaatgttacatttgtcatctcaagaaat 282

                                                                       
Query: 181 taatgctgctatataaatgttcatttaacttttaaattttatcagttttcccattaaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 281 taatgctgctatataaatgttcatttaacttttaaattttatcagtttttccattaaggt 222

                                
Query: 241 tctttttagtgtctaggatca 261
           |||||||||||||||||||||
Sbjct: 221 tctttttagtgtctaggatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)