BAC Information

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BAC

Clone NameMSMg01-234N19
Chromosome3 (Build37)
Map Location 47,018,084 - 47,018,368
singlet/doubletsinglet
Overlap genenone
Upstream geneEG241989, LOC545517, LOC383849
Downstream geneLOC383850, LOC100039426, LOC666202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234N19.T7 (MSMg01no234_n19.b1)MSMg01-234N19.TJ (MSMg01no234_n19.g1)
ACCAG400618AG400619
length731707
length of high quality
(start - end)
---285 (58 - 342)
definitionCHROMAT_FILE: MSMg01no234_n19.b1 PHD_FILE: MSMg01no234_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:59 2005CHROMAT_FILE: MSMg01no234_n19.g1 PHD_FILE: MSMg01no234_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTACCTATTGAATACTGATGTGTTAACAAGCACCTGACAATATGTT
CACCATCCTAAAGCTTTTGTCACACGAAAAACACACCTGCCCTGAAACTC
CACCTCTCACCAATCTGAGTGGCTAACACTATATTTCTATGTAGACATCA
GATGCGTGACTAAGATGAGCACTGAGAGTTAACACTCCTCCATTGTTGTA
GCAATTGCTAGCTTGTACAATCCCTCTGAGATTCATTCTGCTGGTTCCTC
AAAAAAGTGAACCTAGGACTACCTAATGATACAACATTACCTCTCCTGAC
CATATATCCAAACTTTTTTCTATCCCCCCCCACCGACACTTGTTCCATAA
TGTTCTTACCAATGTTATTTCCAATGCATCAAATACTGGGATTATGCTGA
ATGCCCCTCAACATAGCTGTGTCTTGTGAAACTGTGGTACATTTCCACCA
TACAGTACTACGCAGCTATTAGAACTCCTAGCGAACGGATGACACTGGCA
CCCATCATCCTGATTGAGGTAGCCCCATCGCAGCAGAACTCACATGATAT
GCTCTCGCTGTTAAATGGATATTAACTCCCCAGACCTCGAATACCTCTTA
TCTTTAACTTAATTTGCATCACACGATGTACTCACGAGCAACGACTATCA
AGCTGTGGACACTTTGCCCCTTCTTATACTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAAATAAGTCACAGGTCCAGGAGTTCTGAGTTTACTTTCCACCA
TTCATCCTTTTAATATTAATAACAGCAAGGATGCTGCTCACATCTGTTGT
GTAATCAAGTCATCACATCACATTCCATCACCAAGTCCCAGTCTATGAGT
ACCCACCATACCTACTCTAACCTGAACTCTTGGAATAGTGTGACATTTGC
AAGTGACAAATTGAATGGTGGCAACCATCTTACAAAGATATACATTGTCT
TCCTTATTCACCAATATCAACTTTAGTTTTAAAAGCATTTTTCNCATTAT
TCCTTATCATATCGCGATTTTGAAAATATTCATATTTTAATTATCTAATT
CACTGAAAAAAAAAATTAAGGTTTCTTTGGAAAGCCAGTTGTGCCAGATG
GTATTTTGATGAGAGAACCATGAAGGAGTATTTTCCTGAAGAATTTCACA
TAGGTGAATGGATGTTTCCTTAAGGCAGACACATGAAGGGACATATGAGG
AACGATTCTTCATTAAAGGACACACATGCATTGATCTGCCTTACACTGTG
TAGATGAGTTCCAATTGTGACGACTCCACAGAGAAATGCACCAATAGACT
TCTGGTGGTGATGTGATGGCACCTTGCTGCTTCAGTGGACTTGGGCCAAT
TGGCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_n19.g1 MSMg01no234_n19.g1 CHROMAT_FILE:
MSMg01no234_n19.g1 PHD_FILE: MSMg01no234_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:59 2005
         (285 letters)



>mm_chr3_47017884_47018568
          Length = 685

 Score =  443 bits (229), Expect = e-129
 Identities = 271/285 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaataagtcacaggtccaggagttctgagtttactttccaccattcatccttttaatatt 60
           ||||||||||||||||||| ||||||||||||||||| ||||| ||||  ||||||||||
Sbjct: 485 aaataagtcacaggtccagcagttctgagtttactttgcaccagtcattattttaatatt 426

                                                                       
Query: 61  aataacagcaaggatgctgctcacatctgttgtgtaatcaagtcatcacatcacattcca 120
           ||||| |||||| ||||||||||||||| ||||||||| ||||||||| |||||||||||
Sbjct: 425 aataatagcaagaatgctgctcacatctattgtgtaattaagtcatcatatcacattcca 366

                                                                       
Query: 121 tcaccaagtcccagtctatgagtacccaccatacctactctaacctgaactcttggaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tcaccaagtcccagtctatgagtacccaccatacctactctaacctgaactcttggaata 306

                                                                       
Query: 181 gtgtgacatttgcaagtgacaaattgaatggtggcaaccatcttacaaagatatacattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gtgtgacatttgcaagtgacaaattgaatggtggcaaccatcttacaaagatatacattg 246

                                                        
Query: 241 tcttccttattcaccaatatcaactttagttttaaaagcattttt 285
           | ||| ||| ||||||||||||||||| |||||||||||||||||
Sbjct: 245 tgttctttagtcaccaatatcaactttggttttaaaagcattttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)