BAC Information

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BAC

Clone NameMSMg01-235B24
Chromosome3 (Build37)
Map Location 94,642,512 - 94,792,160
singlet/doubletdoublet
Overlap genePogz, Psmb4, Selenbp1, Rfx5, Pik4cb
Upstream geneEG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn
Downstream geneZfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235B24.T7 (MSMg01no235_b24.b1)MSMg01-235B24.TJ (MSMg01no235_b24.g1)
ACCAG400801AG400802
length714727
length of high quality
(start - end)		596 (45 - 640)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no235_b24.b1 PHD_FILE: MSMg01no235_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:22 2005CHROMAT_FILE: MSMg01no235_b24.g1 PHD_FILE: MSMg01no235_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,791,569 - 94,792,160)(94,642,512 - 94,642,800)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAGAGCATGACGGCAGTGGCCATTGCACTCTGTTCTATAGCTAGC
ATTTCAAGCCTCTGCTTAATTCAATTCTATGACTGAAGTTCTTGATAGAG
GCACTACATTTGGGTTTTCCTCAAGAATTTAGGCAGAAGATCATTTGCAG
GGTGTAGTCACACTTGGAAACACCCTGCTAAGGCTACAACTCTTCTACTT
TGGGTAGAAGTGGGAAGGAAAGAGGCAGTGAAGATGTCAGAATCTGTTAT
AATCTGCTGGTCCAACTTCTATACTCATGCTAGTTGCAGAAGAAAAAAGG
CAGAAAATTGGCCTAGCTGATCCTCTCCCAGACAGGCCCCAGTGGGCTCA
TTAATGTCCATGGCAGACAGCACGGTCTCATGATCTGTTCTCCTCCTACT
CCCTGGGCCTGAGTCACTTGTACTGAGTCAGCTTCAGGGAGTGAAGCTGA
AGCCAGGAGCTGACATCACACCCTTATCAGGCTGGAAAGGCTTCCAGTGT
GACATGCAGCAGATGTCTCTGTACAAAGGTTACAGTCCTGAAAAGACAAA
GCTAATCTCTTTGAAGTGTCATTATGTAGGGGAGGGTGTGATTAAGGGTT
GNNNTCNTTTTTTATTTTTTTTTCCTCTTCTTCTTTCGACACATCCTCTT
TTCTATTGTTTTTN

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAAAGGGTCAATACCACTGCA
CATTTCTCACTTATCTTAAGCCTTTACTAAGAGAGCTGAGAGTCTTTTTG
GCCTTTTCGTTCTCTAGGAAGACATGGAGATTGAATTGTAATGTCTTTTC
AACAGTGCAGAGATAGCCTTTTCTCCACACCTGTTCACCTCCTTTTGTAG
CGCAAAACGCCACAAAGATGAGGTTTTAAAAGCAGTTTCCCCAGATGAAG
CGAGAAAGGAGTAAGGCAGCTGTTCCTCTTGGACGGTGACAAGGCAGTTG
GACCCCGTCCGTGTTCTGTATTGACCCCCCCCGCCCATGACTTCTTTATT
GTCGTCATTCTTAACTTTAGGGCGCATTCAAGCATTTTGGAGGCTATTAA
AGTGAAGTTTAAGGACTTTGTGCCTAAAAGGTTTTTTTTTTTTTTTTTGG
AGGGTGGGGTGGAGCCNCTATTCTACTCTCTTTTTATATTTCACCCCCAC
ACCGTTTTATTATTTATTATTCTTCTATTTTTCGTCTCTACCTTTTATTC
CTCTATTTACCACACCTACCATTTCGTTCCTCTTTTCAACTCCTTCTTTG
CTTTATGTTCACTATTATTTAATTTCTTTTTTATCCGGCAGACTTGGTCT
AAGTTAAGCCAAATTTTATTTGTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_b24.b1 MSMg01no235_b24.b1 CHROMAT_FILE:
MSMg01no235_b24.b1 PHD_FILE: MSMg01no235_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:22 2005
         (596 letters)



>mm_chr3_94791365_94792360
          Length = 996

 Score = 1098 bits (568), Expect = 0.0
 Identities = 586/592 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctagagcatgacggcagtggccattgcactctgttctatagctagcatttcaag 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gaattcctagagcaagaaggcagtggccattgcactctgttctatagctagcatttcaag 737

                                                                       
Query: 65  cctctgcttaattcaattctatgactgaagttcttgatagaggcactacatttgggtttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 cctctgcttaattcaattctatgactgaagttcttgatagaggcactacatttgggtttt 677

                                                                       
Query: 125 cctcaagaatttaggcagaagatcatttgcagggtgtagtcacacttggaaacaccctgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cctcaagaatttaggcagaagatcatttgcagggtgtagtcacacttggaaacaccctgc 617

                                                                       
Query: 185 taaggctacaactcttctactttgggtagaagtgggaaggaaagaggcagtgaagatgtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 taaggctacaactcttctactttgggtagaagtgggaaggaaagaggcagtgaagatgtc 557

                                                                       
Query: 245 agaatctgttataatctgctggtccaacttctatactcatgctagttgcagaagaaaaaa 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 556 agaatctgttataatctgctggtccaacttctatacttatgctagttgcagaagaaaaaa 497

                                                                       
Query: 305 ggcagaaaattggcctagctgatcctctcccagacaggccccagtgggctcattaatgtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ggcagaaaattggcctagctgatcctctcccagacaggccccagtgggctcattaatgtc 437

                                                                       
Query: 365 catggcagacagcacggtctcatgatctgttctcctcctactccctgggcctgagtcact 424
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 catggcagacagtagggtctcatgatctgttctcctcctactccctgggcctgagtcact 377

                                                                       
Query: 425 tgtactgagtcagcttcagggagtgaagctgaagccaggagctgacatcacacccttatc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgtactgagtcagcttcagggagtgaagctgaagccaggagctgacatcacacccttatc 317

                                                                       
Query: 485 aggctggaaaggcttccagtgtgacatgcagcagatgtctctgtacaaaggttacagtcc 544
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 316 aggctggaaaggcttccagtgtgacatgcagcagatgcctctgtacaaaggttacagtcc 257

                                                               
Query: 545 tgaaaagacaaagctaatctctttgaagtgtcattatgtaggggagggtgtg 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgaaaagacaaagctaatctctttgaagtgtcattatgtaggggagggtgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no235_b24.g1 MSMg01no235_b24.g1 CHROMAT_FILE:
MSMg01no235_b24.g1 PHD_FILE: MSMg01no235_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:22 2005
         (289 letters)



>mm_chr3_94642312_94643000
          Length = 689

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcaaagggtcaataccactgcacatttctcacttatcttaagcctttactaagagagc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ttgcaaagggtcaataccactgcacatttctcacttatcttaagcctttagtaagagagc 260

                                                                       
Query: 61  tgagagtctttttggccttttcgttctctaggaagacatggagattgaattgtaatgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagagtctttttggccttttcgttctctaggaagacatggagattgaattgtaatgtct 320

                                                                       
Query: 121 tttcaacagtgcagagatagccttttctccacacctgttcacctccttttgtagcgcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcaacagtgcagagatagccttttctccacacctgttcacctccttttgtagcgcaaa 380

                                                                       
Query: 181 acgccacaaagatgaggttttaaaagcagtttccccagatgaagcgagaaaggagtaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgccacaaagatgaggttttaaaagcagtttccccagatgaagcgagaaaggagtaagg 440

                                                            
Query: 241 cagctgttcctcttggacggtgacaaggcagttggaccccgtccgtgtt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagctgttcctcttggacggtgacaaggcagttggaccccgtccgtgtt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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