BAC Information

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BAC

Clone NameMSMg01-235D24
Chromosome3 (Build37)
Map Location 142,665,412 - 142,817,605
singlet/doubletdoublet
Overlap geneLOC100039883
Upstream geneGabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053
Downstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235D24.T7 (MSMg01no235_d24.b1)MSMg01-235D24.TJ (MSMg01no235_d24.g1)
ACCAG400885AG400886
length723726
length of high quality
(start - end)		284 (383 - 666)264 (386 - 649)
definitionCHROMAT_FILE: MSMg01no235_d24.b1 PHD_FILE: MSMg01no235_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:32 2005CHROMAT_FILE: MSMg01no235_d24.g1 PHD_FILE: MSMg01no235_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,665,412 - 142,665,695)(142,817,366 - 142,817,605)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCTTCAGATACCTGCTTCAAACCTTTGAACTCCTGCCTTTCCTC
TCAGGCCAGTCACTCCTAGCCTTTACCCTTGTTTCTGAATTGACAGAGAC
TGTTGCAACTCTGAATTGACTTTTCGAACTTTATATTCTAGTGAGACCGA
GCTGAGGGTGAGAGTTAAAGGGAGTACATTATGCCATACTGAGATGAAAG
AGAATATGAATGTTCAGATGACTTCAAGAAGTCACTGTGGTGACTGGTTT
AACCCTCTGTATTGTAAGGATTAGGTCTAAGTGAGGCAAGTGAGCAGAGA
TCAGGTCATGGAAGGTCATGTGACATTCTGGAAATTTTGTTTTGAGATGG
GTCTCCTATAACCCAGGGTGGCTTCAAACTCACTACATAGCTCTAAGGAT
GATTTTGAATCTCTGATCATTCTGCTTCCATCTCTCAAGTGCTGAACTCA
CGTGCTACCAAGTCAGGTATTTGATTAACCTGTATTCCCATTGCTTGGCA
TTGTGAGCAGCAGGTAAAGAATAAATGCTGTTTGACTTAGTGGTTTAACT
TTTGTGGGTTATGCTGGACAGTGTTTCGTGGCACATATCTCTCCTAGACC
ATCAAATCCTCCCTGCCACCCTGCCATTAGTTAAATATCCACCAAAAATG
CTTCATGACTTGGACATCTGAAA

CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCTCAAGACCAACTCTCCTTT
AAAAAAATATTAGAATGCTGAGAACAGCCACTGAGTATTGCTGGGAAAGT
CAGTCTTATATGTGTGGAGTGGTAGCACTGGTCTGAGACACGAAGCAGAT
GGGAAGGACTTTAGGGAGAGGGGATAAAGAAGAGGGCAACCACAGGATGC
TGCTCTGGTCTCTTCTCCACTTTTGTTCTTATCCATGCCCCTTACTCCCT
CTCTGCAGGACTCTGGCATCTCATCTACTTATTCTCAGGAGTTAAGTCAT
AGCAAGACAAGTGTTTGTGAGTTTGACCCACCCAGGTGCTAACTAGCTAA
GCTCAGATAAGTGGCTTCTCACTTTGTTCCTTTCAAATAACCAGGAGGAA
AGAACTAAGCATGTCTCTGATATGGACATCTGTAGCAAGGATTTATTTAG
CAGACTATAGTTTTCCAATGTCTGCTCTCCTTACCATAGGTATCTCTTTC
ACAAACCACAAACATATACATTCTCTCTCTCTCTCCCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
TTCACTCTCTCTCTCTCCAACATATTATTTTCTTGTAAATATACCCCCTT
GATGACCTTTGTTATTGATATGCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_d24.b1 MSMg01no235_d24.b1 CHROMAT_FILE:
MSMg01no235_d24.b1 PHD_FILE: MSMg01no235_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:32 2005
         (284 letters)



>mm_chr3_142665212_142665895
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattttgttttgagatgggtctcctataacccagggtggcttcaaactcactacatagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattttgttttgagatgggtctcctataacccagggtggcttcaaactcactacatagct 260

                                                                       
Query: 61  ctaaggatgattttgaatctctgatcattctgcttccatctctcaagtgctgaactcacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaaggatgattttgaatctctgatcattctgcttccatctctcaagtgctgaactcacg 320

                                                                       
Query: 121 tgctaccaagtcaggtatttgattaacctgtattcccattgcttggcattgtgagcagca 180
           ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tgctaccaagtcaggcatttgattaacctgtattcccattgctcggcattgtgagcagca 380

                                                                       
Query: 181 ggtaaagaataaatgctgtttgacttagtggtttaacttttgtgggttatgctggacagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtaaagaataaatgctgtttgacttagtggtttaacttttgtgggttatgctggacagt 440

                                                       
Query: 241 gtttcgtggcacatatctctcctagaccatcaaatcctccctgc 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttcgtggcacatatctctcctagaccatcaaatcctccctgc 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no235_d24.g1 MSMg01no235_d24.g1 CHROMAT_FILE:
MSMg01no235_d24.g1 PHD_FILE: MSMg01no235_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:32 2005
         (264 letters)



>mm_chr3_142817220_142817883
          Length = 664

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgctaactagctaagctcagataagtggcttctcactttgttcctttcaaataaccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtgctaactagctaagctcagataagtggcttctcactttgttcctttcaaataaccagg 327

                                                                       
Query: 61  aggaaagaactaagcatgtctctgatatggacatctgtagcaaggatttatttagcagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aggaaagaactaagcatgtctctgatatggacatctgtagcaaggatttatttagcagac 267

                                                                       
Query: 121 tatagttttccaatgtctgctctccttaccataggtatctctttcacaaaccacaaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tatagttttccaatgtctgctctccttaccataggtatctctttcacaaaccacaaacat 207

                                                                       
Query: 181 atacattctctctctctctccctctctctctctctctctctctctctctctctctctctc 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 206 atacattctctctctctctctctctctctctctctctctctctctctctctctctctctc 147


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 103
Number of extensions: 32
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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