Query= MSMg01no235_e20.b1 MSMg01no235_e20.b1 CHROMAT_FILE:
MSMg01no235_e20.b1 PHD_FILE: MSMg01no235_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:36 2005
(310 letters)
>mm_chr3_72214115_72214824
Length = 710
Score = 545 bits (282), Expect = e-159
Identities = 296/306 (96%), Gaps = 9/306 (2%)
Strand = Plus / Minus
Query: 4 ggaattccaagccagaccaaatccctgtagggagagtggacttggaaatgcaatttcacc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggaattccaagccagaccaaatccctgtagggagagtggacttggaaatgcaatttcacc 380
Query: 64 cttagccttggaggtacttgtgatggttaactgctgggagaaggagaaaaagttctcctg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cttagccttggaggtacttgtgatggttaactgctgggagaaggagaaaaagttctcctg 320
Query: 124 aagagtataactgttgattaggtccaccattctgccagacaaacatgaatccaagaaatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aagagtataactgttgattaggtccaccattctgccagacaaacatgaatccaagaaatt 260
Query: 184 ttggtgacggctccaaacacataccagcttgatctatttactacagtgaagagagtggaa 243
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttggtgatggctccaaacacataccagcttgatctatttactacagtgaagaga------ 206
Query: 244 tttgtccttgcaataaggcctcattgttgatctagcatcattctgggttgtttagaagtc 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ---gtccttgcaataaggcctcattgttgatctagcatcattctgggttgtttagaagtc 149
Query: 304 aacaca 309
||||||
Sbjct: 148 aacaca 143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_e20.g1 MSMg01no235_e20.g1 CHROMAT_FILE:
MSMg01no235_e20.g1 PHD_FILE: MSMg01no235_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:36 2005
(637 letters)
>mm_chr3_72186093_72187127
Length = 1035
Score = 1181 bits (611), Expect = 0.0
Identities = 630/637 (98%), Gaps = 2/637 (0%)
Strand = Plus / Plus
Query: 1 acttgtgaaatggccctgccagatactactttttctttttgacattacaaataatgtata 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 acttgtgaaatggccctgccagatactactttttctttttgatattacaaataatgtata 260
Query: 61 tgcaataagtctccagttgttttttttttgttgttgttgttggattttttctgtttttca 120
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 tgaaataagtctccagttgtttttttt--gttgttgttgttggattttttctgtttttca 318
Query: 121 tcaatgtagaagaaaaacaccaaaatattttcctcaaacattaaatgtcccataactgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tcaatgtagaagaaaaacaccaaaatattttcctcaaacattaaatgtcccataactgag 378
Query: 181 acatttatataaataagaatataaaagaaacatcagaaaaatatacttaagattctcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acatttatataaataagaatataaaagaaacatcagaaaaatatacttaagattctcatg 438
Query: 241 tgacagaaaaactttccaagaagaaatccctagttaacataaaagtagtttattcatggc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgacagaaaaactttccaagaagaaatccctagttaacataaaagtagtttattcatggg 498
Query: 301 cagtcagacagaacataattggagaatgatgagggctgtggtttaacagtcataaactag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cagtcagacagaacataattggagaatgatgagggctgtggtttaacagtcataaactag 558
Query: 361 aagcaacattctaaggcctgttgccatgttcttggtattcaatgaggtatttcttccctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aagcaacattctaaggcctgttgccatgttcttggtattcaatgaggtatttcttccctc 618
Query: 421 tgagggcagagtacctgtcacacaaggctctagagaagtaagggtcaatataacctttcc 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgagggcagaggacctgtcacacaaggctctagagaagtaagggtcaatataacctttcc 678
Query: 481 aagtttagttttgtgtcttatttcagaaaagaagactcaaaggaaattaaaatattattc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aagtttagttttgtgtcttatttcagaaaagaagactcaaaggaaattaaaatattattc 738
Query: 541 ctgcttttaattttcaaattatctctattgtaaagtgtactatagcatgtctaactatat 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 739 ctgcttttaattttcaaattatctctattgtaaagtgtattatagcatgtctaactatat 798
Query: 601 tcttggtaaatgttattttcttacatttatttaattt 637
|||||||||||||||||||||||||||||||||||||
Sbjct: 799 tcttggtaaatgttattttcttacatttatttaattt 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1035
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1025
Effective search space: 642675
Effective search space used: 642675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
