BAC Information

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BAC

Clone NameMSMg01-236G03
Chromosome3 (Build37)
Map Location 93,055,407 - 93,188,065
singlet/doubletdoublet
Overlap geneEG668300, LOC668304, Flg, LOC100042701, Hrnr
Upstream geneLOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574
Downstream geneRptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236G03.T7 (MSMg01no236_g03.b1)MSMg01-236G03.TJ (MSMg01no236_g03.g1)
ACCAG401655AG401656
length737730
length of high quality
(start - end)
332 (381 - 712)233 (126 - 358)
definitionCHROMAT_FILE: MSMg01no236_g03.b1 PHD_FILE: MSMg01no236_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:56 2005CHROMAT_FILE: MSMg01no236_g03.g1 PHD_FILE: MSMg01no236_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,055,407 - 93,055,738)(93,187,833 - 93,188,065)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTCTTCCACTTTAATTAAAATATTTATAGATGAAGCTACATCCT
CCTCTGACTTTATCTCATTCCTCCGTCTGTCTCTTACCTCCATGAGATAG
TCACTGAAAAGCCAAGCTTGGTTCTCCTCAGGTACCTACAAGGTAATTAT
ATGCACAAATATAAGCACAAAGACAAATATTTCACAGTTTGTATGCATTT
CTATCTAAAAGGTGTTTTGCTATAGAACTTATTCTGTAATATACAGCTTT
TGCTGAATAAAGTTAATTCATTTCAATTGCTTATAAAATTTTATGATAGG
GATATGCATGTTATTTTTTACACACATGACTCACCTCTGGTGAGCATTCA
GGTTTATTTTCAGAATTACAAACAATGCTGTCTTAATATTGTGCTTGTTT
CTCTTTGTTTACACATATTGTTTGTCAAGGGTGTATCTAGAAATGGAATC
ATTGGCAATAGGTGTTTGCAATTTGAATCTTAATAGATATTGCCAAACTG
CTTTCTAATTAACATTGACACTCCCATAGAGGTGTATGAAAGTGGCCTTT
CCCCAGCAGAGCCCAAATTGCATCACCTTCATAAGTTCTACTAATCTTTG
GCATCAACAATACCATCCATATGCCTATGCCTCTGTCTCTGTCTCTCTCT
TATCACTTATGTTTTTCTGAAGTCTTTTCTCAATATA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGAGGACAGAGACTTCAGTGTCCC
CATCCTTGCATTCTCTTTGATCTTGTCACAGTACTGGGGTCCCATTAGCG
GTGGGCTGAACTGGTTGACTTTCCACCTCTTCAAATCTGTACACTCTGAA
TTCTCATTTATGATTCATTCTGTTTGTAATTTATTGACTCCTGTGACATA
TGAAAAACATAGAACCTTACAAAATGGGGACAGGAAGATGTCCCTTTGGG
GTTGGAAGCAGGTCCATTGTCAGGCCACAATGATGTCAAGAAGTCTGGAG
AGTGGTTGTTGTTATACCCCCACCTTACGCACAGAAGGAACAGAAAGAAC
TGTGTTCCTTAGAAATAGCTATATGTACAATCTCCCAGGTCTAACTGGGA
GGCCATTCCCCAGGTATATTATGTGTCTCACAGCAGGTGGCTGGCCTCAT
CTGTGATGCTAGCCAACATGTGTAACACACACATGGAGCAGGCTAGTTAG
AGGACTGAAGGCAGTGAGTGCTAGGTGAGATCTAAACTCATATACCAGCG
AGTGGNTTTGTAACTTTCCTAATGATGTGACTCTGATTCAGTTCCTTATG
TTGTGCCGATACCCCCTCCCCAACCCCCTTTTACCACCCCACAATTATTA
TTATTATTATCATCATTATTAATATTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_g03.b1 MSMg01no236_g03.b1 CHROMAT_FILE:
MSMg01no236_g03.b1 PHD_FILE: MSMg01no236_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:56 2005
         (332 letters)



>mm_chr3_93055207_93055938
          Length = 732

 Score =  627 bits (324), Expect = 0.0
 Identities = 330/332 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacctctggtgagcattcaggtttattttcagaattacaaacaatgctgtcttaatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacctctggtgagcattcaggtttattttcagaattacaaacaatgctgtcttaatatt 260

                                                                       
Query: 61  gtgcttgtttctctttgtttacacatattgtttgtcaagggtgtatctagaaatggaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcttgtttctctttgtttacacatattgtttgtcaagggtgtatctagaaatggaatc 320

                                                                       
Query: 121 attggcaataggtgtttgcaatttgaatcttaatagatattgccaaactgctttctaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attggcaataggtgtttgcaatttgaatcttaatagatattgccaaactgctttctaatt 380

                                                                       
Query: 181 aacattgacactcccatagaggtgtatgaaagtggcctttccccagcagagcccaaattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacattgacactcccatagaggtgtatgaaagtggcctttccccagcagagcccaaattg 440

                                                                       
Query: 241 catcaccttcataagttctactaatctttggcatcaacaataccatccatatgcctatgc 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 catcaccttcataagttctactaatctctggcatcaacaataccatccatatgcctatgc 500

                                           
Query: 301 ctctgtctctgtctctctcttatcacttatgt 332
           |||||||||||||||| |||||||||||||||
Sbjct: 501 ctctgtctctgtctctgtcttatcacttatgt 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no236_g03.g1 MSMg01no236_g03.g1 CHROMAT_FILE:
MSMg01no236_g03.g1 PHD_FILE: MSMg01no236_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:56 2005
         (233 letters)



>mm_chr3_93187633_93188265
          Length = 633

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacagtactggggtcccattagcggtgggctgaactggttgactttccacctcttcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tcacagtactggggtcccattagcggtgggctgaactggttgactttccacctcttcaaa 374

                                                                       
Query: 61  tctgtacactctgaattctcatttatgattcattctgtttgtaatttattgactcctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tctgtacactctgaattctcatttatgattcattctgtttgtaatttattgactcctgtg 314

                                                                       
Query: 121 acatatgaaaaacatagaaccttacaaaatggggacaggaagatgtccctttggggttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 313 acatatgaaaaacatagaaccttacaaaatggggacaggaagatgtccctttgggattgg 254

                                                                
Query: 181 aagcaggtccattgtcaggccacaatgatgtcaagaagtctggagagtggttg 233
           |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 253 aagcaggtccattgccaggccacaatgatatcaagaagtctggagagtggttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)