BAC Information

Click to search

BAC

Clone NameMSMg01-236H23
Chromosome3 (Build37)
Map Location 32,628,885 - 32,629,310
singlet/doubletsinglet
Overlap geneMrpl47
Upstream geneKcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a
Downstream geneNdufb5, Usp13, Pex2, EG545512, LOC100041058
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236H23.T7 (MSMg01no236_h23.b1)MSMg01-236H23.TJ (MSMg01no236_h23.g1)
ACCAG401733AG401734
length724793
length of high quality
(start - end)
550 (37 - 586)238 (185 - 422)
definitionCHROMAT_FILE: MSMg01no236_h23.b1 PHD_FILE: MSMg01no236_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:04 2005CHROMAT_FILE: MSMg01no236_h23.g1 PHD_FILE: MSMg01no236_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACGAA
ACTCTTGCCCGAACTTATGATTTATACAAGACAAGAACCCATGGGGATGG
GTTGTGTGGTCTGGAATTTGTTTTACAAGACAAAACACTTTGTCGTTTAG
GGGATGGGGACCTCTCTTTATATAAGACCGCTAATATATCCACAGGAGAG
GAGTTTTAAAGGTCCCGAGAGGGGAAACCAGGCCACCCGTCTCCACTCTT
AGAAGTCAGTATAATCATGTACCAGACAATTCGTCCAAAGATGTCCCTTC
TCCAAGCACCGGGTCTGGGTTTTTCTTGACCGGTCTGAAGAAGCCTTAGA
GCATCTTCCCTCTCCTGGACAACTTTATCTAAGTTATCCATGGAATCAAC
GACCTGCGGTGAGAAGAAGACAGCTAACTTTAGCCGTCACCTGCAACTGC
ATTCCAAAAGAACTCTAGGGGATCCACAAAGCGGGAACTTGTATTTTTTT
TTTTTTTTTTTTAGAAACCACCCTTTACTGTACTTCATAAGAAGCCTTTG
ATGAGTGTTCACGGGTGTCTGTTGCATGACTCTCCGTAACCTGCTGGAAG
CTTTATCCTTTCCTTTCTGAATCTTTGCTTCCGAGGGCACACGGTACTAG
CACTCAGTCTGAGAATGCTGCAAGCCAAGGAGAAGTGACAACCTCTGCTG
TCCTTGTCCAAGCCAAGGACACAC
CCTTCTTCCCTTCCTCCTCCTTTCTTTCTTTCCCTTTTTATATTTTTNNN
NTTCACTATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTCTGACTTCCTTCAG
TGATAGACCATGTCGTGGGAGTGTAATGTGACCCAGACCCTATCCTCACC
AAGTTGCTCTTGGTCGCAGTGTCTTATCAGAGCAATAGAAACCAAACTGA
AACAGATATTAGCACCGGCGTGGAATATTGCTGTGAGAGACCATTGGGGG
AAGGATTGTGGGAGAACGTTGGAATTACGTGCTTTCTAGAAAACCCACAG
CTTCCATGTAAGAACTGGTGCAGTCTCTTTCATCTGTCATCCCAGTGCTG
CTACAGGAAAAAGGAGGCAGATTGTTTTTGGCCCCCCCCCCCTCTCAAGC
CAGGGAGCCCGGCCTATGTAGCAGTAACCATCAAAAGATAACCTACCTCA
GGTAATGTGGAGAGTGAGGACAGAAATATCGTGGGTCATCTGATGACCTC
CACACATGCACTGTGTTATGGAGAAAGACGAGACATAGACGGAGGCACAG
ACCCCCAGATATCGACAGAATAAAGGTGTCCTGTTAAAACACACTACTGG
GGATGTAGAGATGGCTCATGAGGACGAAAGATTAACAGTCTTATGATTTA
AGTCCATATCTACACCAAAGCCAAGCTGATTTGTCCCAAGGTTACCCCAC
CGAAATTTATCTCAGTAAGAGTTTTTCAAAGATAAATTTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_h23.b1 MSMg01no236_h23.b1 CHROMAT_FILE:
MSMg01no236_h23.b1 PHD_FILE: MSMg01no236_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:04 2005
         (550 letters)



>mm_chr3_32628567_32629516
          Length = 950

 Score =  770 bits (398), Expect = 0.0
 Identities = 421/432 (97%), Gaps = 6/432 (1%)
 Strand = Plus / Plus

                                                                       
Query: 119 tggggacctctctttatataagaccgctaatatatccacaggagaggagttttaaaggtc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tggggacctctctttatataagaccgctaatatatccacaggagaggagttttaaaggtc 378

                                                                       
Query: 179 ccgagaggggaaaccaggccacccgtctccactcttagaagtcagtataatcatgtacca 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccgagaggggaaaccaggccacccgtctccactcttagaagtcagtataatcatgtacca 438

                                                                       
Query: 239 gacaattcgtccaaagatgtcccttctccaagcaccgggtctgggtttttcttgaccggt 298
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 439 gacaattcgtccaaagatgtcccttctccaagcaccgggtctgggcttttcttgaccggt 498

                                                                       
Query: 299 ctgaagaagccttagagcatcttccctctcctggacaactttatctaagttatccatgga 358
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 499 ctgaagaagccttagagcatcttccctctcctggacaactttatctacgttatccatgga 558

                                                                       
Query: 359 atcaacgacctgcggtgagaagaagacagctaactttagccgtcacctgcaactgcattc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atcaacgacctgcggtgagaagaagacagctaactttagccgtcacctgcaactgcattc 618

                                                                       
Query: 419 caaaagaactctaggggatccacaaagcgggaacttgtatttttttttttttttttttag 478
           |||||||||||||||| |||||||||||||||||||||| ||||||||||||      ||
Sbjct: 619 caaaagaactctagggcatccacaaagcgggaacttgtactttttttttttt------ag 672

                                                                       
Query: 479 aaaccaccctttactgtacttcataagaagcctttgatgagtgttcacgggtgtctgttg 538
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 673 aaaccaccctttactgtacttcgtaagaagcctttgatgagtgttcacgggtgtctgttg 732

                       
Query: 539 catgactctccg 550
           ||||||||||||
Sbjct: 733 catgactctccg 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)