CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGACTCACCGGTGAAGATTACTAAATTATAGTGAAAGTCGACTTGA
ATAATTTTTGGAAAAACTTATTTCAAAAATTCTCTAGGTGGGTGGAGGAG
AGTGCAGGGGCAGAGCAACTGCCCAGCCTGCAGGGCCCTGATCCTAGCGC
TGGAAAAGAATTCTTGAAAAAGGAACAAATAGGTCAACAGGGAAGGCAGA
TCATGAGACCCAGGTAACTCGTAAACGGAAATACCTGACTCGATGAAAAA
CTGTGTCAGCAATGAAGAGAAGAAAGCTATGAATCAAGGAAAACAAGCCA
GTTTAAGTAGTTTACTTTCTGATGGGGATCCTTCCCAATGACCTCACACA
ACCAAAAATAAAGATAAAATGGTAGCAACTATGTTTAATAGGATAAATAC
TGATCCATTCAGACAGGAACCGTAGAACAACGGTATGTGTGTGTGTGTGT
GTGTGTGTGTATAGCGTTATGCCGATAACAAAATAACAGAGGGAGTAAGA
CTACTGATGATATATACATTGTAACATGTATATATTAAGATGACAGATGA
AGTTAAACTGTTCCACTCATATTTTGTTTTTTATGTTTTTAATTTAAGGG
AGAGATCTTGAGCCTAGAGAGAGCAGAACATGAATACCTATGGAGAAATT
GATGCCTGAGAGTGGCCTCGGACAGCGACCGTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATC
CAGCAATTCTTCTCCTGCGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTTATAGCACCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATATCCAAGATATAAGATACAATTTC
CTAAACACATGAAACTCAAGAAAAATGAAGACTGAA

Query= MSMg01no236_i16.b1 MSMg01no236_i16.b1 CHROMAT_FILE:
MSMg01no236_i16.b1 PHD_FILE: MSMg01no236_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:08 2005
         (663 letters)



>mm_chr3_116661913_116662976
          Length = 1064

 Score = 1079 bits (558), Expect = 0.0
 Identities = 637/668 (95%), Gaps = 9/668 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgactcaccggtgaagattactaaattatagtgaaagtcgacttgaataatttt 64
           |||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattctgactcagtggtgaagattactaaattatagtgaaagtcgacttaaataatttt 264

                                                                       
Query: 65  tggaaaaacttatttc-aaaaattctctaggtgggtggaggagagtgcaggggcagagca 123
           |||||||||||||||| |||||||||| |||||||||| ||||||| |||||||||||||
Sbjct: 265 tggaaaaacttatttcaaaaaattctccaggtgggtgggggagagtacaggggcagagca 324

                                                                       
Query: 124 actgcccagcctgcagggccctgatcctagcgctggaaaagaattcttgaaaaaggaaca 183
           ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 325 actgcccagcctgcagggccctgctcctagcactggaaaagaattcttgaaaaaggaaca 384

                                                                       
Query: 184 aataggtcaacagggaaggcagatcatgagacccaggtaactcgtaaacggaaatacctg 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 aataggtcaacagggaaggcagatcatgagacccaggtaactcgtaaacggaaatatctg 444

                                                                       
Query: 244 actcgatgaaaaactgtgtcagcaatgaagagaagaaagctatgaatcaaggaaaacaag 303
           || |||||||||||  |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 445 acgcgatgaaaaaccatgtcagtaatgaagagaagaaagctatgaatcaaggaaaacaag 504

                                                                       
Query: 304 ccagtttaagtagtttactttctgatggggatccttcccaatgacctcacacaaccaaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccagtttaagtagtttactttctgatggggatccttcccaatgacctcacacaaccaaaa 564

                                                                       
Query: 364 ataaagataaaatggtagcaactatgtttaataggataaatactgatccattcagacagg 423
           |||||||| |||||| |||||| ||||||||||| |||||||||||||||||||||| ||
Sbjct: 565 ataaagatcaaatggcagcaaccatgtttaatagtataaatactgatccattcagacggg 624

                                                                       
Query: 424 aaccgtagaacaacggtatgtgtgtgtgtgtgtgtgtgtgtgt--------atagcgtta 475
           |||||||||||||||||||||||||||||||||||||||||||        |||||||||
Sbjct: 625 aaccgtagaacaacggtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatagcgtta 684

                                                                       
Query: 476 tgccgataacaaaataacagagggagtaagactactgatgatatatacattgtaacatgt 535
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggcgataacaaaataacagagggagtaagactactgatgatatatacattgtaacatgt 744

                                                                       
Query: 536 atatattaagatgacagatgaagttaaactgttccactcatattttgttttttatgtttt 595
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atatattaagatgaaagatgaagttaaactgttccactcatattttgttttttatgtttt 804

                                                                       
Query: 596 taatttaagggagagatcttgagcctagagagagcagaacatgaatacctatggagaaat 655
           |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 805 taatttaagggagagatcttgatcctagaaagagcagaacatgaatacctatggagaaat 864

                   
Query: 656 tgatgcct 663
           ||||||||
Sbjct: 865 tgatgcct 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1064
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1054
Effective search space:   688262
Effective search space used:   688262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)