BAC Information

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BAC

Clone NameMSMg01-236I24
Chromosome3 (Build37)
Map Location 129,686,760 - 129,687,018
singlet/doubletsinglet
Overlap geneSec24b
Upstream genePitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b
Downstream geneEG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236I24.T7 (MSMg01no236_i24.b1)MSMg01-236I24.TJ (MSMg01no236_i24.g1)
ACCAG401779AG401780
length789733
length of high quality
(start - end)
---259 (437 - 695)
definitionCHROMAT_FILE: MSMg01no236_i24.b1 PHD_FILE: MSMg01no236_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:09 2005CHROMAT_FILE: MSMg01no236_i24.g1 PHD_FILE: MSMg01no236_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACACAGNGTCGNGACCGCCNCGGAANTCCCAAGGTTACCTAAGCGGGGC
GNAGCAGAATAGCAGGAAAGGNCATGATGCCATCTGGTTCCAGATGCGGG
GGGAGAAGGAGTAGGAGGGGGGAGGNTTNNNTGGTTTTGTTGCGTGGACC
GGGGGGGGGTGGGGGATATTGTGCCGTGCTTGGCGCCCCCCGCCCCACCC
CGAGGCACCCAGAACGGACGCGCCCGCTTTTTTTCGAGGCGCCCCCGCAC
GTAGCCCCCCCACGCTGACCCCCCCAAAAGCACACGGGGCAGAAAATCGG
TGGGTTGCCCCCCGCGCCCCCGCGAGGCGAAGAGGGATGTTTTTTCCCCG
GCGACCCCCCCCAGAAAAAAGAGGGAGAAGGGGAGGCGGGCGGGGCGCGC
CCCCCAAAAAAAAAAAAAAATAACTGGCCCGGGAGGGCCGCGCGGTTCCA
CCACAGCGAAAATGAGGCGACCCCGCAGCACACAGCCCCCACGCCAGCCA
CGCAGCCAAACAAAACACGACGCGGCAAAGCGCGAGCGTCCAGCCAACCC
ACCACCCCCCCACACACCCACCCGCCCCGCGAAACCAAACGAGCGGACGA
GAAAATCCCCAGGCACAGAAGGGCACACCCGCAAATAGCGCGAACCCGCA
AACCCACGCCACGCAAAGACCACCACAGCAAAAACAAACCCTTTCTATCT
TTGTTCCCCACCCCCAGAAAAACGCGCACACGCGCAGACGAAAGAAGGGA
CGACCGAAGAATGCAGCAAATTGATCAAAACCCCATCGC
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTCATGAACATGAGTCGTTCCT
GTTAAGAAGTAATTCATACAAGCGAGCACCACAGTGCCGCTGCCCTTCGG
CATCTCTCATCAGAGTTCAAGTCCAGAATGCTAACTGTACGATGACTCTT
TCTAGTTCCAGAGCATGACATGTCATTCCGTGGTCCTCAGGTCTGCTGGC
TGGCAGAGGGGCACCGCACTGCTGCTCTCCTGAGAGGACGCAGAAACCGA
CTCCGTCTGCTGCCTCAGCGTCCTTGGAGGGGCTCTGCTGTGTCTTGTTC
TCTCTTCTCCTTATTTTCTGGCCCACCCCTCCCAGTGATGTGCATCGTTC
TTCTAGCAGCAAACACCTCGTGTCCAGTCAACTGTGTGCTTCTCCGATGG
CTGCGGAGCTGCTCAGCTGACCCGGCTCTGCTGATGTCACTTACAAACCT
GCTGTTGGATGTGAATCAGAAACTCATAGTAGGAGAGTGCGGCTTCCGTG
CGGTCTTCAAGCAAATGCTGGAAAAAGTCTGTTTTGGCAGGGCTCTCATC
TCTGAAAGGCAGAAAACACCATGTATCTAATATATATATTATTACAAAGA
AAAACTACCCATTGCGGACATCACTACTCCACGGACTTGAGGAAAACCCT
GAGATGTGCTTCGAGGAGAAGCACAGAAGGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_i24.g1 MSMg01no236_i24.g1 CHROMAT_FILE:
MSMg01no236_i24.g1 PHD_FILE: MSMg01no236_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:09 2005
         (259 letters)



>mm_chr3_129686560_129687218
          Length = 659

 Score =  501 bits (259), Expect = e-146
 Identities = 259/259 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcttctccgatggctgcggagctgctcagctgacccggctctgctgatgtcacttacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcttctccgatggctgcggagctgctcagctgacccggctctgctgatgtcacttacaa 260

                                                                       
Query: 61  acctgctgttggatgtgaatcagaaactcatagtaggagagtgcggcttccgtgcggtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctgctgttggatgtgaatcagaaactcatagtaggagagtgcggcttccgtgcggtct 320

                                                                       
Query: 121 tcaagcaaatgctggaaaaagtctgttttggcagggctctcatctctgaaaggcagaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaagcaaatgctggaaaaagtctgttttggcagggctctcatctctgaaaggcagaaaa 380

                                                                       
Query: 181 caccatgtatctaatatatatattattacaaagaaaaactacccattgcggacatcacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caccatgtatctaatatatatattattacaaagaaaaactacccattgcggacatcacta 440

                              
Query: 241 ctccacggacttgaggaaa 259
           |||||||||||||||||||
Sbjct: 441 ctccacggacttgaggaaa 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)