CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATGCTGGCCTCATCTTCTGATTTTATTTTCTGCAAAGGCCAGCAA
ATCTCTGTGATAACTTTATTATGCACCATTTGTAATGATTACTTGACAGC
TTTCTCTTGTTCGCATCATGATTTCCAACCACCACTGTGGAAGGGCTAGC
TCAAATAGTTCTCCAGTCTGCTTCTCCACTCAGACTCTGGCCTTGCTTGG
GCCTGTGCTGCTGCCTTTACCCACAGAGGTGGTGGAGTAATCCACGGGGA
GAGTGGTCTTGACTTCAAGCAAAGTGGTACAATTAGAGGACCATGGTGTG
TGAACCACTCAGTATGCCTGTCTTGATAGAGAACAGTGAGTAGATAGTGG
TGTGGTGTAGACAGACTCAAAGAAGTAAGAAGCAGGAACCACTGAGACCA
GGAGGTGAGCAGACATGTTCTGCTGATATAAATGCTTTTGAATGAGCGTA
TTCAAGGATGAATAAAACATTTTAGCCTATGTATGTAGCAATCAGAAATT
TTCTTTCCTGATACGTGGTAATAATAGCTGACAAGAATGTAATACTTAGA
TTTTTGGTGCAGCTTACTTGCCAGAGTGACACCACCTCCAAACAACTTTA
GGCCTCACTTTCCACATGTTCTTCCATGGTCCCTGCAGATATCCCAACAC
TGAATTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTGGGACAGTGGATATGGAGGAATA
AAGGGAGTAGGAGAAAACCCACATCCCACCAGAGTTCCGGTGCTCTGGGC
AGGCAGACGCAGAGGACTGCTGCACACTTTCCATGCGGCCCTGAGTGGGT
GTCTGGCTGTGGGAAGCTATGGATCCAGCCCACAGGGGGTGGACAAGGGG
CAGGTCTAGGTCTCTGGGCCTCATGGAGGCCAGAGATAACAGATTCTCAG
TCTCAGGCATCCCAGACACCACTGGACACCGCAGAAGGGCTGAGAACAAA
ATGGGACCTCTAGGGGCTGCTCGGCCAGTCAACCCCGGAGCCAAAGGGAG
GAGAGGGCAGGGAGAGAGGGGGCACTGGGTGGTTCCCACATGGGCAAGAG
TCCTTGGTCCAGTTTGTGGCTGGAATGCAGGAAGGCCTTCCAGCAGGAGG
TTAGACGAAGCTCTTTAGGGGAAAGGCAATCTCATCCTTCAAGCATGGCG
GGCCTTGATGAGCAGAGACAGGGGCCTTGATGAGCAGAGACAGGCTATGG
TTTTAGAGCTTTATTGTAGAAAGGCAGAGAGAAAGAGAGAATATATAAAG
AGAGAGAGGGTCAGCCATGTCCATGTGGAGAGAGGGCAGAAGGGAGAGAG
AGAAGGAGAA

Query= MSMg01no236_l17.b1 MSMg01no236_l17.b1 CHROMAT_FILE:
MSMg01no236_l17.b1 PHD_FILE: MSMg01no236_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:22 2005
         (664 letters)



>mm_chr3_155160016_155161079
          Length = 1064

 Score = 1224 bits (633), Expect = 0.0
 Identities = 651/657 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatgctggcctcatcttctgattttattttctgcaaaggccagcaaatctctgt 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gaattctatgctggcctaatcttctgattttattttctgcaaaggccagcaaatctctgt 802

                                                                       
Query: 65  gataactttattatgcaccatttgtaatgattacttgacagctttctcttgttcgcatca 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gataactttattatacaccatttgtaatgattacttgacagctttctcttgttcgcatca 742

                                                                       
Query: 125 tgatttccaaccaccactgtggaagggctagctcaaatagttctccagtctgcttctcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgatttccaaccaccactgtggaagggctagctcaaatagttctccagtctgcttctcca 682

                                                                       
Query: 185 ctcagactctggccttgcttgggcctgtgctgctgcctttacccacagaggtggtggagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcagactctggccttgcttgggcctgtgctgctgcctttacccacagaggtggtggagt 622

                                                                       
Query: 245 aatccacggggagagtggtcttgacttcaagcaaagtggtacaattagaggaccatggtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatccacggggagagtggtcttgacttcaagcaaagtggtacaattagaggaccatggtg 562

                                                                       
Query: 305 tgtgaaccactcagtatgcctgtcttgatagagaacagtgagtagatagtggtgtggtgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 tgtgaaccactcagtatgcctgtcttgatagagaacagtgagtagatggtggtgtggtgt 502

                                                                       
Query: 365 agacagactcaaagaagtaagaagcaggaaccactgagaccaggaggtgagcagacatgt 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 agacagactcaaagaagtaagaagcaggaaccactgagaccaggaggtgagcagtcatgt 442

                                                                       
Query: 425 tctgctgatataaatgcttttgaatgagcgtattcaaggatgaataaaacattttagcct 484
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tctgctgatataaatgcttttgaatgagagtattcaaggatgaataaaacattttagcct 382

                                                                       
Query: 485 atgtatgtagcaatcagaaattttctttcctgatacgtggtaataatagctgacaagaat 544
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 atgtatgtagcaatcagaaattttctttcctgatacgtggtaataataactgacaagaat 322

                                                                       
Query: 545 gtaatacttagatttttggtgcagcttacttgccagagtgacaccacctccaaacaactt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaatacttagatttttggtgcagcttacttgccagagtgacaccacctccaaacaactt 262

                                                                    
Query: 605 taggcctcactttccacatgttcttccatggtccctgcagatatcccaacactgaat 661
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggcctcactttccacatgttcttccatggtccctgcagatatcccaacactgaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)