Query= MSMg01no237_e17.b1 MSMg01no237_e17.b1 CHROMAT_FILE:
MSMg01no237_e17.b1 PHD_FILE: MSMg01no237_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:05 2005
(501 letters)
>mm_chr3_33417640_33418540
Length = 901
Score = 930 bits (481), Expect = 0.0
Identities = 496/501 (99%)
Strand = Plus / Minus
Query: 1 ttttttttctttctctgctgtgtgtaattccttcttcccattcaatgttacctacctcta 60
||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||
Sbjct: 701 ttttttttctttctctgctgtgtgtaattccttcttcccattcaatgctacccaactcta 642
Query: 61 ctaacatcctggggtgagaaatcactccataaatgaaacaaatgttcattttccctcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ctaacatcctggggtgagaaatcactccataaatgaaacaaatgttcattttccctcaat 582
Query: 121 ttcacctattttaatccccaaactctttcggatggagatacaccaattaaaatgagtgag 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 581 ttcacctattttaatccccaaactctttcagatggagatacaccaattaaaatgagtgag 522
Query: 181 acacacagaagaagcacggttaattaatttattctgtgttaagcaaaatgaatcagttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 acacacagaagaagcacggttaattaatttattctgtgttaagcaaaatgaatcagttga 462
Query: 241 aagaaaaacccatttcctgtgcagcattttcaattactgttatgattaatgttttaaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aagaaaaacccatttcctgtgcagcattttcaattactgttatgattaatgttttaaata 402
Query: 301 cttttgtattcctttttatcccaaagaaaaatagccacattaacaagaagctaaaataga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cttttgtattcctttttatcccaaagaaaaatagccacattaacaagaagctaaaataga 342
Query: 361 atcttgtggaatggaagactgtatccacataccattatataaagttttgctatttcagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 atcttgtggaatggaagactgtatccacataccattatataaagttttgctatttcagag 282
Query: 421 tatgtaaagaatttataaaattcaacagcaggagacaattcagttttaaaataatcaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tatgtaaagaatttataaaattcaacagcaggagacaattcagttttaaaataatcaaag 222
Query: 481 aagactcatttctttcaagaa 501
||||||||||||| |||||||
Sbjct: 221 aagactcatttctctcaagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_e17.g1 MSMg01no237_e17.g1 CHROMAT_FILE:
MSMg01no237_e17.g1 PHD_FILE: MSMg01no237_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:05 2005
(327 letters)
>mm_chr3_33277306_33278033
Length = 728
Score = 472 bits (244), Expect = e-137
Identities = 307/338 (90%), Gaps = 21/338 (6%)
Strand = Plus / Plus
Query: 3 aaaaacttttgcag----cagtctttccactgcagtacaataaaaaaaag------aaat 52
|||||||||||||| |||||||||||| |||||||||| ||| |||
Sbjct: 199 aaaaacttttgcagcaaacagtctttccaccgcagtacaat------aaggtttttcaat 252
Query: 53 ttggagaggagaaaattgtagatttaaagctaagtaaaaagtac---ctacctgcagtca 109
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 253 ttggagaggagaaaattgtagatttaaag-taagtaaaaagtactaactacctgcagtca 311
Query: 110 taaaagaaaaaaaaatactatgttgatagtaactttcctttgaattggagcactaacaat 169
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 312 taaaag-aaaaaaaatactatgttgatagtagctttcctttgaattggagcactaacatt 370
Query: 170 aaaattattaaaatgtctatataaccttgactttttaaatagaatttcaaatattacatt 229
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||
Sbjct: 371 aaaattattaaaatgtctatataaccttgaatttttaaacagaatttcaaatatttcgtt 430
Query: 230 tatcagaacctttaaacttccataccttcagccttcagcatcatccagggattctccatt 289
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 431 tatcagaacccttaaacttccacaccttcagccttcagcatcatccagggattctccatt 490
Query: 290 ctcctttccctgtggaagccttaaaatatgaactaatc 327
||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctcctttccctgtggaagccttaaaatatgaactaatc 528
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 728
Length adjustment: 9
Effective length of query: 318
Effective length of database: 719
Effective search space: 228642
Effective search space used: 228642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
