Query= MSMg01no237_g17.b1 MSMg01no237_g17.b1 CHROMAT_FILE:
MSMg01no237_g17.b1 PHD_FILE: MSMg01no237_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:14 2005
(629 letters)
>mm_chr3_59246918_59247941
Length = 1024
Score = 973 bits (503), Expect = 0.0
Identities = 591/623 (94%), Gaps = 7/623 (1%)
Strand = Plus / Plus
Query: 8 ttctcaaacctcacgcacttatcttcatggatgtatttatatttctgttcagactggaag 67
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctcaaacctcaagcacttatcctcatggatgtatttatatttctgttcagactggaag 267
Query: 68 attttgccctgcaccatctctaatgctggcttagtagtcatgactttctttagcctactt 127
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 attttgccctgaaccttctctaatgctggcttagtagtcatgactttctttagcctactt 327
Query: 128 tgatcatgtaaagtttttctatttctcttaccaagtccggcttgacagccagtcttttaa 187
|||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 328 tgattatgtaaagtttttctttttctcttaccaagtctggcttgacagccagtcttttaa 387
Query: 188 cttggaatacatccttccttgctgcttttgttcttaagtttctgtgggtcagtcagctgc 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 388 cttggaatacatccttccttgctgcttttgttcttaagtttctgtgggtcagtcaactgt 447
Query: 248 taattc-gatgggcctgccttcaatataacttggtatttttcccttctaacattcactgt 306
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 taat-ctgatgggcctgccttcaatataacttggtatttttcccttctaacattcactgt 506
Query: 307 agaccgtttctttggtgtatttatttagtacttttacctataatacgatatagggagagc 366
|||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 agactgtttcttccgtctatttatttagtacttttacctataatacgatatagggagagc 566
Query: 367 tccttttacctgatgtgttgttcttctcctgatatattatattctatgtgccagagtttc 426
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 567 tccttttacctgatgtgttgttcttctcctgatgtatt-----ctatgtgccagagtttc 621
Query: 427 tactacttaagttttttcttcagaatttcttcatattgagttatattttcatatatcagc 486
||||||||||| |||||||||||||||||| | ||||||||||||||||||||| ||| |
Sbjct: 622 tactacttaaggtttttcttcagaatttctccttattgagttatattttcatatgtcaac 681
Query: 487 ctacatatttttaattaatctgcttgtcttcacttgaaattcacttagtaatttattacc 546
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctacatatttttaattaatctgtttgtcttcacttgaaattcacttagtaatttattacc 741
Query: 547 gtgtcctttgatttgtttcaatgtatttataattattattttgaattctttatccaatat 606
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 742 atgacctttgatttgtttcaatgtatttataattattattttgaattctttatccagtac 801
Query: 607 ttcatctgatatactccttagcc 629
|||||||||| ||||||||||||
Sbjct: 802 ttcatctgatgtactccttagcc 824
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1024
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1014
Effective search space: 627666
Effective search space used: 627666
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_g17.g1 MSMg01no237_g17.g1 CHROMAT_FILE:
MSMg01no237_g17.g1 PHD_FILE: MSMg01no237_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:15 2005
(650 letters)
>mm_chr3_59308121_59309170
Length = 1050
Score = 746 bits (386), Expect = 0.0
Identities = 424/442 (95%), Gaps = 11/442 (2%)
Strand = Plus / Minus
Query: 1 aaaatagctgcatttccactaggaaaccttaaaattaaagctaattctccgaggtcctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 442 aaaatagctgcatttccactaggaaaccttaaaattaaagctaattctctgaggtcctgg 383
Query: 61 tcattctgctgcttgtgtaggattgtttgacatgtttagtgcttattctgttttttcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcattctgctgcttgtgtaggattgtttgacatgtttagtgcttattctgttttttcttt 323
Query: 121 tttaaaaatttatttggtttatttactttcccagtctatggctcctaaaattgaaatcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttaaaaatttatttggtttatttactttcccagtctatggctcctaaaattgaaatcaa 263
Query: 181 tagtcagattttttttttctctacacggatatttttattttaaccggtgttcttggatac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tagtcagattttttttttctctacacggatatttttattttaaccggtgttcttggatac 203
Query: 241 cttttttgttttgttttggatgttttctttttttacatttcaaatgttttcccctttcca 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cttttt-gttttgttttggatgttttctttttttacatttcaaatgttttcccctttcca 144
Query: 301 gccctccccttcagaaacttcctatcttatcatccct-----t-----tatgaggttgct 350
| |||||||||||||||| ||||||||||||||||| | ||||| ||||||
Sbjct: 143 ggtctccccttcagaaactccctatcttatcatccctccccctgcctctatgatgttgct 84
Query: 351 cccctaccaagccacccattactgtcttccagtcctagcattcacctatactggagcacc 410
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 83 cccctaccaagccactcattactgtcttccagtcctagcattcacctacactggagcacc 24
Query: 411 aaacaccctcagggcaaggacc 432
||||||||||||||||||||||
Sbjct: 23 aaacaccctcagggcaaggacc 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
