Query= MSMg01no237_i05.b1 MSMg01no237_i05.b1 CHROMAT_FILE:
MSMg01no237_i05.b1 PHD_FILE: MSMg01no237_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:21 2005
(690 letters)
>mm_chr3_35386557_35387646
Length = 1090
Score = 1303 bits (674), Expect = 0.0
Identities = 683/686 (99%)
Strand = Plus / Plus
Query: 5 gaattcatctaactgaaagctgtgaacaaaaacatattatacgaacatttatattatata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatctaactgaaagctgtgaacaaaaacatattatacgaacatttatattatata 264
Query: 65 tgaatataactaacccgtttgttcccagcctttggtatacaatatatacagtttttctta 124
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaatataactaaagcgtttgttcccagcctttggtatacaatatatacagtttttctta 324
Query: 125 taaaaattttattgattctttgtcaatctcacatcatgcaccccaatccatccattgctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaaaattttattgattctttgtcaatctcacatcatgcaccccaatccatccattgctt 384
Query: 185 catctcctctcccctctgcccctggaacttcctccccagaagaaaagaaaacaaaaaacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catctcctctcccctctgcccctggaacttcctccccagaagaaaagaaaacaaaaaacc 444
Query: 245 atctcaccatagtggctgtagtgtcatggcatgtcacacagtaaaccattttgtgcccac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atctcaccatagtggctgtagtgtcatggcatgtcacacagtaaaccattttgtgcccac 504
Query: 305 agctttacttgcgaatggtcattggagtgattcagtggtctggttcatggtctctggttt 364
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agctttacttgtgaatggtcattggagtgattcagtggtctggttcatggtctctggttt 564
Query: 365 ctgctccacaatcaacactggatcttccccaggactcttctcagatataatgttgttgcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctgctccacaatcaacactggatcttccccaggactcttctcagatataatgttgttgcc 624
Query: 425 ctgtgtcatggagacctgcaactttggatctaaagaaccagtctcttcacatgttccaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgtgtcatggagacctgcaactttggatctaaagaaccagtctcttcacatgttccaga 684
Query: 485 ggttcataaatgtggtagacattggcgtgggccaactcagagtcccagatctgggcctgg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggttcataaatgtggtagacattggcgtgggccaactcagagtcccagatctgggcctgg 744
Query: 545 ggggtagctgagctggtcagcccaccagctctcccatatctgcatcactaggaccagtcc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggggtagctgagctggtcagcccaccagctctcccatatctgcatcactaggaccagtcc 804
Query: 605 cctgtcttacagtggcaaggagagtaatatatatttagtaatgtgttgcaggaattagtt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cctgtcttacagtggcaaggagagtaatatatatttagtaatgtgttgcaggaattagtt 864
Query: 665 aacccgagttcgctcccagtgggttg 690
||||||||||||||||||||||||||
Sbjct: 865 aacccgagttcgctcccagtgggttg 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no237_i05.g1 MSMg01no237_i05.g1 CHROMAT_FILE:
MSMg01no237_i05.g1 PHD_FILE: MSMg01no237_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:22 2005
(660 letters)
>mm_chr3_35428154_35429215
Length = 1062
Score = 1176 bits (608), Expect = 0.0
Identities = 648/662 (97%), Gaps = 2/662 (0%)
Strand = Plus / Minus
Query: 1 aaacttactactggccgtatcttgttagtcctttggtgcatgggctacgagcagagggag 60
||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 862 aaacttactactggctgtatcttgttagtcctttggtgcatgggttaggagcagagggag 803
Query: 61 gaatgagtagctaggaaacctgcaggataaacaggcgtggccggtttgaactagatgtgt 120
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 802 gaatgagtagctaggaaacctgctggataaacaggtgtggccggtttgaactagatgtgt 743
Query: 121 ttggttcccaagcctagtgctctttctcttaaatcacagcctcttctctttggtcacaga 180
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 742 ttggttcccaagcctagtgctctttctcttacatcacagcctcttctctttggtaacaga 683
Query: 181 ggatctc--tgctaatgagacccaccttctgaaaggatatgagacatagcttagcttatg 238
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ggatctctgtgctaatgagacccaccttctgaaaggatatgagacatagcttagcttatg 623
Query: 239 acactatagcgctagaactggcctcagcttgttagggtctgagaatttgggaaataatcc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 acactatagcgctagaactggcctcagcttgttagggtctgagaatttgggaaataatcc 563
Query: 299 actatgaaaatcaaggtcaagccagcaaaagtatttttattcagaaactgttatatcagg 358
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 562 actatgaaaatcaaggtcaacccagcaaaagtatttttattcagaaactgttatatcagg 503
Query: 359 gagatggctggatttgggatcctacctgtgttagcggtggtgatggtggtggtggtagga 418
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 502 gagatggctggatttgggatcctacgtgtgttagcggtggtgatggtggtggtggtagga 443
Query: 419 cagaacagaacaacctttcaagacagaaaaccacagattaagaggggtgagggcatccaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cagaacagaacaacctttcaagacagaaaaccacagattaagaggggtgagggcatccaa 383
Query: 479 tcaagtttgtgcatacactgggtacctcacacctggtacttcatgtgactttctttattc 538
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 382 tcaagtttgtgcatacactgggtacctcacacctggtacttcgtgtgactttctttattc 323
Query: 539 cccggtggtttccttgaggggcacgttggaaggacccccagctgagaactaaccaatgaa 598
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 322 cccggtggtttccttgaggggcacgttgaaaggacccccagctgagaactaaccaatgaa 263
Query: 599 gcctagggttcccacctatgtggtttaggttcatccaggacacctggggccagacaccat 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 acctagggttcccacctatgtggtttaggttcatccaggacacctggggccagacaccat 203
Query: 659 ct 660
||
Sbjct: 202 ct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1062
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1052
Effective search space: 683800
Effective search space used: 683800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
