BAC Information

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BAC

Clone NameMSMg01-237O15
Chromosome3 (Build37)
Map Location 50,037,250 - 50,184,309
singlet/doubletdoublet
Overlap geneLOC100039628, LOC639469, Slc7a11
Upstream gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
Downstream geneEG621304, LOC100039667, Ccrn4l, Elf2, A630062H14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237O15.T7 (MSMg01no237_o15.b1)MSMg01-237O15.TJ (MSMg01no237_o15.g1)
ACCAG402724AG402725
length736761
length of high quality
(start - end)
443 (117 - 559)239 (129 - 367)
definitionCHROMAT_FILE: MSMg01no237_o15.b1 PHD_FILE: MSMg01no237_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:51 2005CHROMAT_FILE: MSMg01no237_o15.g1 PHD_FILE: MSMg01no237_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,183,867 - 50,184,309)(50,037,250 - 50,037,488)
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTCTCTAG
GATGCCGAAAATATTTGTGAAATGTGGGATACAAAAGGTGTAAGAGCCCT
CAAATACTCTTCACCAATGCTATAGTCATCCCCCCCCCCTCTGATTTTAG
TAACATTTTTTTTTCTTAACCAGAATCTGCTGTCAAGGGGACCCTGGATT
TTTTTTTTCCTTCTCCATGCATTTAATTTCTTTCAGAATGTTTCCTTGAA
ATTTCTTTTGTGCACTCTGTGCACAGTCTGGAAGCTAACGTCACTTGTGG
GAACAGGATGTATTATTCCATGAAGACGGCTTGCGTGTGACGCCTCTGCT
ATCGTTCATGCTGTCCTTGGCTTTTATCAGCTGCAGAGTCCTGCTCTGAT
GTTCTTCTTCTCTATGTTTATTCTTTCCTGGTCTTGAGGGTCACATGCAG
TCAGCACAAGGGGAGAACTGACCTGGAGTAGGAAGAGGTCAATGCTGTGC
GTTCAGGAGCTAAGAGATTCACCGTTACATGGTCGTTGCCTGTGTGTGGT
TCCCAAGAGTACTTCATAAATCACTTCAGAGCTTTCTTATAGTTCCCCAG
TTTATCTACATTTAATATTTATGATTGGAAATTTTCTAATTGATTCTGCA
TGATTTTGAGTGACCGGCATCTTTCTTCTTTCTTACTCTTCGAAAACATA
CTGCCTCAAGCTAAGTGTACCTATACACGCTGCTAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCCGGAGCTTCCTAAGAACCCAG
GGCTGTTTCCTTGGGAACGTTTGCCCCAGTAGAGAATGTTAGAAGAAATA
AATCACTCCAGTTGTGACTGCCACTCCATAGACAGGCACCTATAACTCCA
TCCCCTTCCAGTCTGCTGCGTGGGTTTCCACTGATCAGAAAAAACTGGAA
ACCAGTAATGTTGCTCATGTAGCCCAGCCTTCGAGAGGCAGAGAAGGGGA
GAGAAAGCAGGAAAGAACTAAGATGGAAGGTCAAATGGAATATATCTACA
TGGAAACTTCCATGTTGATTTCTGCCCCCCCCCCCACCCTGTTGTCTGGC
AATAAATGTACTGGTAGGATTTTGTAAAACAAAAAGATGACATTACAAAG
ATGCATGGAAATCATGAATTTTGCTAAAGAATAGAAAAACAACAGCAGAA
GCATGTAGTAAGAGATTAATCATGAGCCAAAGCATGGTGTGTGTGTGTGT
GTGTGTGTGTGTATGTGTGTGTGTGCCTTTTCTTTTCCTCTTCCACTTTT
TCTCTTCTTTATTCTTCTTCATTTAACGCTTTCTTTTCTCTTTATCATTC
TCTTTCCATCCCCCGTTCTTATTTCTTTCCATTTCTTACTGCTTTCCATT
TCCTTAATTTATCATTTCTTTAACATTTCTTTGTCTTTTTTTTTTTTCCT
CTCTTGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_o15.b1 MSMg01no237_o15.b1 CHROMAT_FILE:
MSMg01no237_o15.b1 PHD_FILE: MSMg01no237_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:51 2005
         (443 letters)



>mm_chr3_50183667_50184509
          Length = 843

 Score =  849 bits (439), Expect = 0.0
 Identities = 442/443 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgctatagtcatcccccccccctctgattttagtaacatttttttttcttaaccagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 atgctatagtcatcccccccccctctgattttagtaacatttttttttcttaaccagaat 584

                                                                       
Query: 61  ctgctgtcaaggggaccctggattttttttttccttctccatgcatttaatttctttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ctgctgtcaaggggaccctggattttttttttccttctccatgcatttaatttctttcag 524

                                                                       
Query: 121 aatgtttccttgaaatttcttttgtgcactctgtgcacagtctggaagctaacgtcactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aatgtttccttgaaatttcttttgtgcactctgtgcacagtctggaagctaacgtcactt 464

                                                                       
Query: 181 gtgggaacaggatgtattattccatgaagacggcttgcgtgtgacgcctctgctatcgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gtgggaacaggatgtattattccatgaagacggcttgcgtgtgacgcctctgctatcgtt 404

                                                                       
Query: 241 catgctgtccttggcttttatcagctgcagagtcctgctctgatgttcttcttctctatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 catgctgtccttggcttttatcagctgcagagtcctgctctgatgttcttcttctctatg 344

                                                                       
Query: 301 tttattctttcctggtcttgagggtcacatgcagtcagcacaaggggagaactgacctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tttattctttcctggtcttgagggtcacatgcagtcagcacaaggggagaactgacctgg 284

                                                                       
Query: 361 agtaggaagaggtcaatgctgtgcgttcaggagctaagagattcaccgttacatggtcgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 agtaggaagaggtcaatgctgtgcgttcaggagctaagagattcaccgttacatggtcgt 224

                                  
Query: 421 tgcctgtgtgtggttcccaagag 443
           ||||||||||||| |||||||||
Sbjct: 223 tgcctgtgtgtgggtcccaagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no237_o15.g1 MSMg01no237_o15.g1 CHROMAT_FILE:
MSMg01no237_o15.g1 PHD_FILE: MSMg01no237_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:51 2005
         (239 letters)



>mm_chr3_50037050_50037688
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtagagaatgttagaagaaataaatcactccagttgtgactgccactccatagacaggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtagagaatgttagaagaaataaatcactccagttgtgactgccactccatagacaggca 260

                                                                       
Query: 61  cctataactccatccccttccagtctgctgcgtgggtttccactgatcagaaaaaactgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctataactccatccccttccagtctgctgcgtgggtttccactgatcagaaaaaactgg 320

                                                                       
Query: 121 aaaccagtaatgttgctcatgtagcccagccttcgagaggcagagaaggggagagaaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaccagtaatgttgctcatgtagcccagccttcgagaggcagagaaggggagagaaagc 380

                                                                      
Query: 181 aggaaagaactaagatggaaggtcaaatggaatatatctacatggaaacttccatgttg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaaagaactaagatggaaggtcaaatggaatatatctacatggaaacttccatgttg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)