BAC Information

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BAC

Clone NameMSMg01-260B18
Chromosome3 (Build37)
Map Location 84,123,500 - 84,123,868
singlet/doubletsinglet
Overlap genenone
Upstream geneDchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
Downstream gene6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260B18.T7 (MSMg01no260_b18.b1)MSMg01-260B18.TJ (MSMg01no260_b18.g1)
ACCAG402864AG402865
length759941
length of high quality
(start - end)
374 (44 - 417)49 (72 - 120)
definitionCHROMAT_FILE: MSMg01no260_b18.b1 PHD_FILE: MSMg01no260_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:06 2005CHROMAT_FILE: MSMg01no260_b18.g1 PHD_FILE: MSMg01no260_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCCACTTGGCTGACTACCCTGCTGATAAACGCACATGTTTTCTCACCC
ACCACCAGATAGCAACCCTGAGTCACTTCCTCAAGAATGGGAGTTCACAG
GAAGGATCTAGGGTGGAAGGCTCCTGGCTGATGCCCTGGGCTTGTTGATC
CCCATTCCTTCATTCTAGAAGCATTTGTTGGGTGCTGACTCTGTGCTGGG
TGTGCTCCAAGCACTCAAGGAATGCACAGCCTGCGGGCTCCAGGTTTCAC
TGGTATCTTCATGGAGGGATGCCAGCTTTCACTTCATAGTTTGCTATAAA
GAAGACTCCCGGGTCAAAACCACCATGCCTCTCCACAACCCAGCCTTTAA
ACCTGCAGGGTTAAAGCCCCCACCGCTGTGAGGCTCTAGGCTACTTCAAA
GTTGGGATTATTCCTTTTCTAGGAGAATATGACATGTCAGAGTGGCCCAG
ATGAAGCTACAAATTAGAAAAGACTAAACACAGTGGAAAAACCCTCCCCA
CTTTCCCTGGTCAACAACCCCTGGGTGAACTCTGAAAGCCACAGGAAATG
TAATATGAAGTCTTCTGTAAGTTTGATAAAATTAGCCTAATGCAATAATT
TATACCACCATCCTACATATCTTCTGAATGATTGTACCACAAAATACTGC
ATATTGCCCATGTACAACTAACCCTTGTTTCCTATGTTTATCACTTTTCT
ATCTATTTG
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATCCTTCAGAGATGCCCGGGAAGAGGTAA
GATGAGAGGATGGGGGTGAGACGCAACGTTAGGCCTCTTCTTCCTTTTTC
CTTTTTTGTTTTTGCGCTTTCTCCCCCTCGTCTTCTCCTTCCTTTTTCCT
TTTCCTTCTTTCCCCCCTCCCCCTCTTCTTTCTCTCTTTTTTTCTCTTCT
TCTTCTTTCTTTTCTCTTTTTTTTTTCGCTTTTTCTCTTTCCTTGTTCCC
TCCCTCCTTTTCCGCTTCTTCCTCTCCCCTCTTCTTCACCTATCTTTTTT
TTTTTTTTTCTCATCCTCTCCCCCTTTCTTTTTCTTTCCTTTTCTTTCCT
TTTTTTTTCTCCCTCCCCCCTCCCCCTTTTTCTTTCTTCCCTTTTATCTT
TTCTTTTTTCTTTTTCCCCCCCCCCCGGTGTTGGTATTTCTTTTTCTCTT
CTCTTTTTTTTTTTTCTTATACTCTCCTTTTTCTTCCTTTCTCTTTTCTT
CTTCCTTCCCCTTTTTCTTTTCTCTTCCTTTTCTCTTTTTCTCTTTTTCT
TTTCTTCCTTTCCTCTTTTTTACTCTTTTTTCTTTCTCTCTCCTCCTTTC
TTTTCTTTTTTTTCTCTTTTCTTCCTTCCTCTTCACCTTCTTTTTCTTCC
CTTCTCCCTCTCCCTTTTCTTCTCACCTATTTTTTTTCTTTCTTCTTCTC
TTCCTACCTTCTCCTCTCTCCTTTTCTTTCTTCTCTCTTCTCTTTTTCTT
TTTTTTCCCTTCCTTTTTTTCTCACCTATTTTGTTTTTGTCTACTTTTTT
TCTCTCCCTTCTCTCTTCTTTTTCCTCTTTTCCTTCTTCTTCTTTCTTTC
TTTTTCTCTTTGTCTCCGTCTTTTCTTCCTTCTCTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_b18.b1 MSMg01no260_b18.b1 CHROMAT_FILE:
MSMg01no260_b18.b1 PHD_FILE: MSMg01no260_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:06 2005
         (374 letters)



>mm_chr3_84123295_84124068
          Length = 774

 Score =  706 bits (365), Expect = 0.0
 Identities = 368/369 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccacttggctgactaccctgctgataaacgcacatgttttctcacccaccaccag 65
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccacttggctgagtaccctgctgataaacgcacatgttttctcacccaccaccag 265

                                                                       
Query: 66  atagcaaccctgagtcacttcctcaagaatgggagttcacaggaaggatctagggtggaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atagcaaccctgagtcacttcctcaagaatgggagttcacaggaaggatctagggtggaa 325

                                                                       
Query: 126 ggctcctggctgatgccctgggcttgttgatccccattccttcattctagaagcatttgt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggctcctggctgatgccctgggcttgttgatccccattccttcattctagaagcatttgt 385

                                                                       
Query: 186 tgggtgctgactctgtgctgggtgtgctccaagcactcaaggaatgcacagcctgcgggc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgggtgctgactctgtgctgggtgtgctccaagcactcaaggaatgcacagcctgcgggc 445

                                                                       
Query: 246 tccaggtttcactggtatcttcatggagggatgccagctttcacttcatagtttgctata 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tccaggtttcactggtatcttcatggagggatgccagctttcacttcatagtttgctata 505

                                                                       
Query: 306 aagaagactcccgggtcaaaaccaccatgcctctccacaacccagcctttaaacctgcag 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aagaagactcccgggtcaaaaccaccatgcctctccacaacccagcctttaaacctgcag 565

                    
Query: 366 ggttaaagc 374
           |||||||||
Sbjct: 566 ggttaaagc 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)