Query= MSMg01no260_b24.b1 MSMg01no260_b24.b1 CHROMAT_FILE:
MSMg01no260_b24.b1 PHD_FILE: MSMg01no260_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:07 2005
(630 letters)
>mm_chr3_127313059_127314088
Length = 1030
Score = 1075 bits (556), Expect = 0.0
Identities = 601/616 (97%), Gaps = 1/616 (0%)
Strand = Plus / Minus
Query: 15 gcaacgtcagcagaaaatagatcttcaagtgtacctttacctttagtgtatttaaattgt 74
||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 1030 gcaacgtgagcagaaaatagaccttcaagtatacctttacctttagtgtatttaaattgt 971
Query: 75 acaaatcttaagtaatattttaaaataaaattgtgttctggaaactgtatctgataaaag 134
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 970 gcaaatcttaagtaatattttaaaatacaattgtgttctggaaactgtatctgataaaag 911
Query: 135 caattttagatggaaaagctgaaatttataaatcaataaacttctttttaaaaattaaag 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 caattttagatggaaaagctgaaatttataaatcaataaacttctttttaaaaattaaag 851
Query: 195 gatgaagtttttccattaaagaattctattactttaagcttttgttgttgtttgagacag 254
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 850 gatgaagtttttccattaaagaattatattactttaagcttttgttgttgtttgagacag 791
Query: 255 gtttctctatggagctctgactgtactagactcagtctacagaccagcctgggcttaaaa 314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 790 gtttctctatggagctctgactgtactagactcagtctacagaccagcctgggctt-aaa 732
Query: 315 atcacagacactcattagattctgcctcccatacatagggattaaaggcctgtgctcaca 374
|||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 731 atcacagagactcattagattcggcctcccatatatagggattaaaggcctgtgctcaca 672
Query: 375 tgaccaaccatttttaccttttaattcattattatactgctgagagtcaaatagtaaaag 434
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 671 tgaccaaccatttttacctttgaattcattattatactgctgagagtcaaatagtagaag 612
Query: 435 acattttattatttactgactaggaagcaataactataaagcatttttaaaaaatttatt 494
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 611 acattttattatttactgactaggaagcaataactataaagcattttttaaaaatttatt 552
Query: 495 ataaactttgggcaccgagcagtatcaagtctatctgctttcctgaactggacatttgct 554
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 551 ataaactttgggcaccgagcagtgtcaagtctatctgctttcctgaactggacatttgtt 492
Query: 555 agtgcatatttttaaaaaaggggttttgttcttgttgttgttaatatactttcatttgtg 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agtgcatatttttaaaaaaggggttttgttcttgttgttgttaatatactttcatttgtg 432
Query: 615 aataggtaatgattat 630
||||||||||||||||
Sbjct: 431 aataggtaatgattat 416
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_b24.g1 MSMg01no260_b24.g1 CHROMAT_FILE:
MSMg01no260_b24.g1 PHD_FILE: MSMg01no260_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:07 2005
(669 letters)
>mm_chr3_127161527_127162595
Length = 1069
Score = 1232 bits (637), Expect = 0.0
Identities = 658/665 (98%), Gaps = 1/665 (0%)
Strand = Plus / Plus
Query: 5 aaacaagaaaaacggacctggatctgcctaccaactgtgtgtcatctgcttctgctctct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aaacaagaaaaacggacctggatctgcctaccaactgtgtgtcatctgcttctgctctct 264
Query: 65 cgactggcatgaagttttacattggcgggagacattttgaaccaggaaaggttttagcaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgactggcatgaagttttacattggcgggagacattttgaaccaggaaaggttttagcaa 324
Query: 125 tcaacgaataaatgggccacagagaggctgtggccatgaggcgaggaaactgttctaagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaacgaataaatgggccacagagaggctgtggccatgaggcgaggaaactgttctaagt 384
Query: 185 ggggtgtaattacccttccaggcagaggagggtcacccgtctaagggaacagagaaccgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggggtgtaattacccttccaggcagaggagggtcacccgtctaagggaacagagaaccgg 444
Query: 245 tgaccatttaaaacgcactcctaactacacccaggcgataacgaaggacaggacagaggg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgaccatttaaaacgcactcctaactacacccaggcgataacgaaggacaggacagaggg 504
Query: 305 cagaaatagaacgaggaaggcagcaggcaataaaacccggagttcaagtgctgtaccaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagaaatagaacgaggaaggcagcaggcaataaaacccggagttcaagtgctgtaccaca 564
Query: 365 tagcttggatcctgtccctgctacctggagctaagccggccgctccctccatgggactgt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagcttggatcctgtccctgctacctggagctaagccggccgctccctccatgggactgt 624
Query: 425 ggcaatgggaagtgcaaaggtttgaatatggaagacagggtggtgagtttagtttactgg 484
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 625 ggcaatgggaagtgcaaaggtttgaatatggaagacagggtggtgagtttagcttactgg 684
Query: 485 tagagtgctcgcaaagcaactgtgaggtgatgagttcaattcccggcactgcaataaggt 544
||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||| |
Sbjct: 685 tagagtgcttgcaaagcaactctgaggtgttgagttcaattcccggcactgcaataag-t 743
Query: 545 acataaataagtcaataattagctagcatcgtgaatggaccttggagactcacaccttta 604
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 744 acataaataagtcaataattagctagcatcgtgaatggaccttggtggctcacaccttta 803
Query: 605 gtccctgcgctcgggagacagaggcagatgtgttcaaggccagcctgatctacagagcaa 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gtccctgcgctcgggagacagaggcagatgtgttcaaggccagcctgatctacagagcaa 863
Query: 665 gttct 669
|||||
Sbjct: 864 gttct 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
