BAC Information

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BAC

Clone NameMSMg01-260E02
Chromosome3 (Build37)
Map Location 49,727,622 - 49,874,274
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260E02.T7 (MSMg01no260_e02.b1)MSMg01-260E02.TJ (MSMg01no260_e02.g1)
ACCAG402970AG402971
length734761
length of high quality
(start - end)		365 (82 - 446)399 (81 - 479)
definitionCHROMAT_FILE: MSMg01no260_e02.b1 PHD_FILE: MSMg01no260_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:18 2005CHROMAT_FILE: MSMg01no260_e02.g1 PHD_FILE: MSMg01no260_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,727,622 - 49,727,986)(49,873,876 - 49,874,274)
sequence
CGTTCCCCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGA
GGATCCGCGGAATTCAGTTTCTTATGCTTGTGTAAGGAGTGTGCTTACCC
ACTGAGCTATCTGCCCAGTCCAGTGTACTATTCTTAATTGTTCATTTTAA
AAATAATTCCAGAGATTTATAAACATACATTTATAGAATTTCTTCCCCCA
AAAGATTTGTATGAAATGCTAAAGTATTCTTTAATACAGCTACCTTTCCT
TTCCTAACACTAGCATTTACCTCAATGTTTTCATCCATCAATGTTGTAAA
AGTTATACATTAAGAATATCCTAGTGTTTCCTAATATATGCGTACAATGC
TATACCAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACACACCCAC
TCCCCGTTTTTGGTCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTG
CGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTT
GATACATATGCTGCTAGAGTCAAGAGCTCCTGGGTACTGTTTAGTTCATA
ACGTTGTTCTTCCTTTATGCTTGCAGGCCCCCGTTAGCTACTTGTGCACT
CTCTCTAGCTCCTCCATTGTGATCCTTGTGATCCATTCTTTTATCTGATT
GTGATCCTCCACTTTCTGAGTTCGCTAAGTCCTGTTTCACGTTTCTCCCG
ACACCGTTCTATTCTGTTCCCTTTTCCATAACAT

NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTTTCTTGATCTTTGG
TAAAATTCTTCATGTATCCAACAGTTTGAGGAAAAAAAGGTGTCAAATGC
TATGTGCAATTTCTTCAGAAATATTTCATGCCTATAATGCCGTGATCTTG
GTTAAGGAAGGTATTTACTTGCGTCTAGTTTAAGTCTACATAGACCATTT
CTAAGAACATCTGATTTGATGCATTCCTACTGCTCATGCTTCTCAGAAAT
CCAGTCTGAAAAGATGCAGTTTGGTGTATGTCTTAAAATGCTGTGGTGTG
TGCTGCAGTGTCTATGGGATTTTGTTGCTCTTGTTGTTTGTGTGTGTTAG
AGGGGGAGCGAGTGTCTATGCCTATATGCACATTACATGTGTGTTGTGTG
TATATGTTTTATGTGGAGAGCATATATTGTGTGCTGTGTGTAAGTGTTTT
ACCTTCCTTTTTTCTTTCTCCTTTCACTTCTCCATTATCCTCCATTTTCC
TTTTTTTCTTCTCTTCCTCCCCCCTTCCTCTTTCTTCTCTCTTTCTCCCT
TCCTTTCTCTTCCCTTACCCTACTCTCCGCCTCTACTTTCTCTTTTCTCC
CCCATTTACTTTTTTCTCCCCTCATCCTTTTCTCTTTTTTTCTCATACCT
TCTCCATTTCCCCTTTTTTTTTCTTTTCTTCTCCCCAACTTCACTCTATC
TCCTTCATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_e02.b1 MSMg01no260_e02.b1 CHROMAT_FILE:
MSMg01no260_e02.b1 PHD_FILE: MSMg01no260_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:18 2005
         (365 letters)



>mm_chr3_49727422_49728186
          Length = 765

 Score =  690 bits (357), Expect = 0.0
 Identities = 363/365 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaaggagtgtgcttacccactgagctatctgcccagtccagtgtactattcttaattgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaaggagtgtgcttacccactgagctatctgcccagtccagtgtactattcttaattgt 260

                                                                       
Query: 61  tcattttaaaaataattccagagatttataaacatacatttatagaatttcttcccccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattttaaaaataattccagagatttataaacatacatttatagaatttcttcccccaa 320

                                                                       
Query: 121 aagatttgtatgaaatgctaaagtattctttaatacagctacctttcctttcctaacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagatttgtatgaaatgctaaagtattctttaatacagctacctttcctttcctaacact 380

                                                                       
Query: 181 agcatttacctcaatgttttcatccatcaatgttgtaaaagttatacattaagaatatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcatttacctcaatgttttcatccatcaatgttgtaaaagttatacattaagaatatcc 440

                                                                       
Query: 241 tagtgtttcctaatatatgcgtacaatgctataccaaagtcccccatacccacccacccc 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagtgtttcctaagatatgcgtacaatgctataccaaagtcccccatacccacccacccc 500

                                                                       
Query: 301 cactcccctacacacccactccccgtttttggtcctggcgttcccctgtactggggcata 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 cactcccctacacacccactccccgtttttggccctggcgttcccctgtactggggcata 560

                
Query: 361 taaag 365
           |||||
Sbjct: 561 taaag 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no260_e02.g1 MSMg01no260_e02.g1 CHROMAT_FILE:
MSMg01no260_e02.g1 PHD_FILE: MSMg01no260_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:18 2005
         (399 letters)



>mm_chr3_49873676_49874474
          Length = 799

 Score =  748 bits (387), Expect = 0.0
 Identities = 396/399 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttattttcttgatctttggtaaaattcttcatgtatccaacagtttgaggaaaaaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tttattttcttgatctttggtaaaattcttcatgtatccaacagtttgaggaaaaaaagg 540

                                                                       
Query: 61  tgtcaaatgctatgtgcaatttcttcagaaatatttcatgcctataatgccgtgatcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tgtcaaatgctatgtgcaatttcttcagaaatatttcatgcctataatgccgtgatcttg 480

                                                                       
Query: 121 gttaaggaaggtatttacttgcgtctagtttaagtctacatagaccatttctaagaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gttaaggaaggtatttacttgcgtctagtttaagtctacatagaccatttctaagaacat 420

                                                                       
Query: 181 ctgatttgatgcattcctactgctcatgcttctcagaaatccagtctgaaaagatgcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ctgatttgatgcattcctactgctcatgcttctcagaaatccagtctgaaaagatgcagt 360

                                                                       
Query: 241 ttggtgtatgtcttaaaatgctgtggtgtgtgctgcagtgtctatgggattttgttgctc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttggtgtaggtcttaaaatgctgtggtgtgtgctgcagtgtctatgggattttgttgctc 300

                                                                       
Query: 301 ttgttgtttgtgtgtgttagagggggagcgagtgtctatgcctatatgcacattacatgt 360
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 299 ttgttgtttgtgtgtgttagagggggagcgagtgtctatgtgtatatgcacattacatgt 240

                                                  
Query: 361 gtgttgtgtgtatatgttttatgtggagagcatatattg 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gtgttgtgtgtatatgttttatgtggagagcatatattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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