BAC Information

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BAC

Clone NameMSMg01-260G06
Chromosome3 (Build37)
Map Location 116,847,878 - 116,848,464
singlet/doubletsinglet
Overlap genenone
Upstream geneGpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik
Downstream geneLOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260G06.T7 (MSMg01no260_g06.b1)MSMg01-260G06.TJ (MSMg01no260_g06.g1)
ACCAG403068AG403069
length744729
length of high quality
(start - end)
270 (55 - 324)579 (82 - 660)
definitionCHROMAT_FILE: MSMg01no260_g06.b1 PHD_FILE: MSMg01no260_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:28 2005CHROMAT_FILE: MSMg01no260_g06.g1 PHD_FILE: MSMg01no260_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGGCGCACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTTTTATATCTTAAAATCTTCTCTCTCTCTCTCTCT
CCTCTCTCTCTCTCTCTGGTGTGTGTGTGTCGCCGTGTGTGTGTGTGTGC
ATTTTATTTTTTCAGGCATGATCTCCTTAAGTTGTCTAGTCTGGCCTTGA
ATTTATGATCTGTGTGTCAGCCTTCAGGCCGAATGGGATTACAGGCCAGC
CTATTTCTCAGCTTTTCATATTTTATTGAGATTTGTTTTGTTTTGTTTTG
TTTTTCAACACAGGGTTTCTCTGTGTAGCTCTGTTTGTCCTGGAACTCAC
TCTGTATACCAGGCTGGTCTTTTTTTTTCACCCCCGCCCCCCTCTGCTTC
TGTCTCTCAATTGTTGTGATTAAACCCCCCCACTAAAACCAATCTCTTTT
GTTGAGATTTCTCACCATATCGGCCTCACTAGATGTCTTACATCCTTTCC
ATTCCTTTTGCATTTTCTGTGTCGATTTTTCCCTGTTCTTCGTTGCTCAC
CCTATTATTGCGTTTTTACCCCCTTCACTTCCTTTTTTTTTTGTTTACTT
CCGCATACTATTCTCTTTTATCATCTCTTTTATCCCTTTTTTTCACTCAC
ATGCCTCTTCCCCCTCTATATCCTATCCTCTTATATTCTATTATCCCTAT
TCTTCCCCCTTCTCTATCGCTTTATTCCCTTTTCCCCCTCCCTG
NNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTATACAAATATATAT
AAAGAATATATATTCAAATATATATTTGAAGAATTTTTAAGAAGCAAAAT
GCACACATATGTGTGTGTATACACACACACACACACACACACACACACAC
ACATATATTTGTTTCTATTTCTCGTGTTACAAATCTGTAAAAAAAAAAAA
AAAAATCAGATTCCAAGCCTGGCTAAAGTTACAGGCTAATTGACAATTGA
CTGACCAATTTTTGTACTATTTTTCTCATCCATAAAATGAAGCTCAGAAT
AACGCCTATTCCAAAGGGTCACTTCAAATGTCAATGAAATATCAATAAAA
CCTGGAAAATCCTAGGACTATCATACAAGCTGCTCACTAATATTACCTGA
TTTAGTCTTATTACTAAACTTTGTATATTCCTTTTGGTGCCCAGATGATA
TAAAACAGAACTCAAGTAATCTGGGATCCCTGATGGAGTGATATTCAGAA
GTCATTGAATCAGTAGATCATAATTTACTAATCAATAATTAAGGATTGGC
AGAAAAATATTTTGTAAGTATTCTGTCTGTTGTTGCTGCCGTTATCCATA
CAGATTTACATAGTTTGGGGTTTGCTCACATAATCCCTCTAACTTTATGA
AAATAGAAAACATGATATGCATATTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_g06.g1 MSMg01no260_g06.g1 CHROMAT_FILE:
MSMg01no260_g06.g1 PHD_FILE: MSMg01no260_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:28 2005
         (579 letters)



>mm_chr3_116847556_116848540
          Length = 985

 Score = 1062 bits (549), Expect = 0.0
 Identities = 575/587 (97%), Gaps = 10/587 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttatacaaatatatataaagaatatatattcaaatatatatttgaagaatttttaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 tgtttatacaaatatatataaagaatatatattcaaatatatatttgaagaatttttaag 850

                                                                       
Query: 61  aagcaaaatgcacacatatgtgtgtgtatacacacacacacacacacacacacacacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 aagcaaaatgcacacatatgtgtgtgtatacacacacacacacacacacacacacacaca 790

                                                                       
Query: 121 catatat---t-tgtttctatttctcgtgttacaaatctgtaaaaa----aaaaaaaaa- 171
           |||||||   | ||||||||||||||||||||||||||||||||||    ||||||||| 
Sbjct: 789 catatatatatatgtttctatttctcgtgttacaaatctgtaaaaaaaataaaaaaaaat 730

                                                                       
Query: 172 aaatcagattccaagcctggctaaagttacaggctaattgacaattgactgaccaatttt 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aaatcagattccaagcctggctaaagttacaggctaattgacaattgactgaccaatttt 670

                                                                       
Query: 232 tgtactatttttctcatccataaaatgaagctcagaataacgcctattccaaagggtcac 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tgtactatttttctcatccataaaatgaagctcagaataacgcctattccaaagggtcac 610

                                                                       
Query: 292 ttcaaatgtcaatgaaatatcaataaaacctggaaaatcctaggactatcatacaagctg 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 609 ttcaaatgtcaatgaaatatcaataaaacctggaaaatcctaggactatcatagaagctg 550

                                                                       
Query: 352 ctcact-aatattacctgatttagtcttattactaaactttgtatattccttttggtgcc 410
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ctcagtaaatattacctgatttagtcttattactaaactttgtatattccttttggtgcc 490

                                                                       
Query: 411 cagatgatataaaacagaactcaagtaatctgggatccctgatggagtgatattcagaag 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cagatgatataaaacagaactcaagtaatctgggatccctgatggagtgatattcagaag 430

                                                                       
Query: 471 tcattgaatcagtagatcataatttactaatcaataattaaggattggcagaaaaatatt 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tcattgaatcagtagatcataatttactaatcaataattaaggattggcagaaaaatatt 370

                                                          
Query: 531 ttgtaagtattctgtctgttgttgctgccgttatccatacagattta 577
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttgtaagtattctgtctgttgttgctgccgttatccatacagattta 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 985
Length adjustment: 10
Effective length of query: 569
Effective length of database: 975
Effective search space:   554775
Effective search space used:   554775
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)