Query= MSMg01no260_n02.b1 MSMg01no260_n02.b1 CHROMAT_FILE:
MSMg01no260_n02.b1 PHD_FILE: MSMg01no260_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:02 2005
(652 letters)
>mm_chr3_157923681_157924731
Length = 1051
Score = 1164 bits (602), Expect = 0.0
Identities = 637/650 (98%), Gaps = 5/650 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgctagttagtacgataacttcaaaataagacaatgacaaaagcaacaacaac 63
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattctgctagttagtaagataacttcaaaataagacaatgacaaaagcaacaacaac 266
Query: 64 aacaacaacaaaacaacaacaaattcaaatggacttattctgtatagttgaataatgttc 123
|||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 267 aacaacaa---aacaacaacaaattcaaatggacttattctgtaaagctgaataatgttc 323
Query: 124 cttccagaagacatggattattaattgaaaatcaaactacagggcatggatacctctcta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttccagaagacatggattattaattgaaaatcaaactacagggcatggatacctctcta 383
Query: 184 tccatgagttattggtcatagggatggtgtccgaaataaaacaggttagggccattgact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tccatgagttattggtcatagggatggtgtccgaaataaaacaggttagggccattgact 443
Query: 244 ttggttatccatcacactttcatgataagactctattgttgaggatgtcacagtttttct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttggttatccatcacactttcatgataagactctattgttgaggatgtcacagtttttct 503
Query: 304 acagcacatagagaaataaatcactcttaaacaaagctggaattaaactccctgctggct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acagcacatagagaaataaatcactcttaaacaaagctggaattaaactccctgctggct 563
Query: 364 agcttacatagtgtcagtactatgaaggctggtggatggcttgacaccatgtatgtgtta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agcttacatagtgtcagtactatgaaggctggtggatggcttgacaccatgtatgtgtta 623
Query: 424 acagagctgataacttattggattatcaaaaacaaaaagagttcagggacctgaagggga 483
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcagagcggataacttattggattatcaaaaacaaaaagagttcagggacctgaagggga 683
Query: 484 gaaaaaagggctaagtacaaccatatttgattgtatacatgtataaatttttaactaata 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 684 gaaaaaagggctaagtacaaccatatttgattgtatacatgtataaatttttaa-taata 742
Query: 544 aagaataataaaaatgtatttctaaagtatgatttactaaatgtttcaatgaca-taaat 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 743 aagaataataaaaatgtatttctaaagtatgatttactaaatgtttcaatgacagtaaat 802
Query: 603 ataaattattaattaattatatattattattcttattattttatctagtt 652
||| |||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 803 atatattactaattaattatatattattatccttattattttatctagtt 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1051
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1041
Effective search space: 668322
Effective search space used: 668322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_n02.g1 MSMg01no260_n02.g1 CHROMAT_FILE:
MSMg01no260_n02.g1 PHD_FILE: MSMg01no260_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:02 2005
(268 letters)
>mm_chr3_158046894_158047561
Length = 668
Score = 487 bits (252), Expect = e-142
Identities = 261/264 (98%)
Strand = Plus / Minus
Query: 1 tcatgcttccatgatatgtactttacccaattaaactgtcttcccagctgtgttttgtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tcatgcttccatgatatgtactttacccaattaaactgtcttcccagctgtgttttgtat 374
Query: 61 gtccttccaagttaatgacctatggcttctttctctgtggtttttgcctggcttatgtcg 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 373 gtccttccaagttaatgacctatggcttccttctctgtggtttttgcctggcttatgtcg 314
Query: 121 tgacgttcttatatttcttctagctgtatttttggaaggatttaagaagtattaagcact 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgacgtttttatatttcttctagctgtatttttggaaggatttaagaagtattaagcact 254
Query: 181 gtttcattggttgtttggaaaaattcatgtatcaagttctctggtactgactggttgttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 253 gtttcattggttgtttggaaaaattcatgtatcaagttctctggtactgactggtggttg 194
Query: 241 ttgttgttgttgttgttgttgttg 264
||||||||||||||||||||||||
Sbjct: 193 ttgttgttgttgttgttgttgttg 170
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space: 170681
Effective search space used: 170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
