BAC Information

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BAC

Clone NameMSMg01-260N24
Chromosome3 (Build37)
Map Location 95,491,684 - 95,492,255
singlet/doubletsinglet
Overlap geneAdamtsl4
Upstream geneSelenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1
Downstream geneEcm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260N24.T7 (MSMg01no260_n24.b1)MSMg01-260N24.TJ (MSMg01no260_n24.g1)
ACCAG403417AG403418
length822725
length of high quality
(start - end)		224 (76 - 299)571 (82 - 652)
definitionCHROMAT_FILE: MSMg01no260_n24.b1 PHD_FILE: MSMg01no260_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:06 2005CHROMAT_FILE: MSMg01no260_n24.g1 PHD_FILE: MSMg01no260_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATC
CGCGGAATTCACTAGTTATTACGCCTGGTATGGGAACTCAGAAATTAAGA
GCATTTAATTAAATTAACTCAGCATCCAAATGATGGCTTACAACCAACCA
CCTGTAACTCCAGTTCCAGGGGAATCCAACTCCCTCCTCTGATCTTTGCA
AGTACCGGGCACATATATAGTACACATACATAATTGCATGCAGAACACAA
AATAACCTGTGTGTGTGTGTGTGTGTGGAGGAGGGGGGAGAGAGAAAGTT
CTTATTTTTTTTCCCCCCCNCTTACTTTTTTTTTTTCCTCTTCTTCTCCT
CTTCTTTTCCACTTCATCTTTCTATTCTCCCCCCACTTTCTCCCTTTATT
CAATTTATAACATATCTCCCTATTATTTTCCCCCCCCCCCCCAACTGATT
TTTCCTTTTCCTCTCCCATTCTCACCTTTCTCACCCTCTACCTTATTGAT
TTTTCTCACCTCTCTGTTCTCTTTCACTATACTCCCATTCTCATACTTTA
TATTCCTCTATTTTTTTTACTCTTATAATTTACACTCATTCTCTAATTCT
CTCCTCATATTTCCCTATTCTCTTACCTCCTATACCTATTAATTTCTCCC
TCTATAATCTTCCCAGCAATTAATACCTAACCCTCCACCCTATTTAACCC
TTCTTCCCCTCTTCCCATAACTCCTATTATCCTTATTCTCCCCTCTTCTA
CATCCACTGACTCTCATTCTACCAACACTCCCTACTCTTCCACCGTTTAC
ATCCCACTCTCTCTCCTCCTTC

NAAATCGAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTAGGGTCCGCTGTTCT
GAGACAGTCAGAGCCTAGGCGGGGGTCGGGGAGGTTCTACCTTCTCTGCG
CCCGCTCTCTCCAGCTGCCTCTGGTAGCGGCCACCGCGGCCCGGAGCCCC
AGGACAGCGCCGCCCGCGGCAGGCTCCGCCCCACGCCACCCGTGCCCCGC
CCGCCACGCGCCGGCCTCAACCACCCACCCCGGGTGCCCCGTACAGCTAA
AGGGCTTGCAGCCACGCTGTGGACACGGTTCCCGCACCCGCCCCGGGGCT
CGGGACCCTACCAACTCTGGCAGGCTCCTTTTGGTTGGAGCCTGTCCTCG
AAGAACCTGGGCTAGCCCCGAACCAGCAAGGGGATTTGCAAACTAGACCC
ATGTAGCCCTGAGCAAACTCAGATCTGCTCAAGCCAAGGCCCTCTCCTCC
ATGCAGCCAATGCCATCGCCTCCGCTTTTCCCATACTGGGCAGTGAACCA
TGTGGCTCTGATGGCCAGGGACCTCTCTGAGCCTCGGTTTCTTCATCCAT
AAAATTTTACACCCTGGAGCTTAGCGGGAGGAATGCACGCTGAATTATGA
GTCAGACAATTTGGATTTGAATTTCCGCTTGAGCACTTGCCAGCTCTGTG
GTCTTTCATGAGCACTTCAACTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_n24.g1 MSMg01no260_n24.g1 CHROMAT_FILE:
MSMg01no260_n24.g1 PHD_FILE: MSMg01no260_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:06 2005
         (571 letters)



>mm_chr3_95491484_95492455
          Length = 972

 Score = 1044 bits (540), Expect = 0.0
 Identities = 564/572 (98%), Gaps = 1/572 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttagggtccgctgttctgagacagtcagagcctaggcggggg-tcggggaggttctac 59
           |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 201 ccttagggtccgctgttctgagacagtcagagcccaggcggggggtcggggaggttctac 260

                                                                       
Query: 60  cttctctgcgcccgctctctccagctgcctctggtagcggccaccgcggcccggagcccc 119
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 cttctctgcgcccgctctctccagctgcctctggtagtggccaccgcggcccggagcccc 320

                                                                       
Query: 120 aggacagcgccgcccgcggcaggctccgccccacgccacccgtgccccgcccgccacgcg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggacagcgccgcccgcggcaggctccgccccacgccacccgtgccccgcccgccacgcg 380

                                                                       
Query: 180 ccggcctcaaccacccaccccgggtgccccgtacagctaaagggcttgcagccacgctgt 239
           |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ccggactcaaccacccaccccgggtgccccgtacagctaaagagcttgcagccacgctgt 440

                                                                       
Query: 240 ggacacggttcccgcacccgccccggggctcgggaccctaccaactctggcaggctcctt 299
           ||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 441 ggacacggttcccgcgcccgccccggggctcgagaccccaccaactctggcaggctcctt 500

                                                                       
Query: 300 ttggttggagcctgtcctcgaagaacctgggctagccccgaaccagcaaggggatttgca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggttggagcctgtcctcgaagaacctgggctagccccgaaccagcaaggggatttgca 560

                                                                       
Query: 360 aactagacccatgtagccctgagcaaactcagatctgctcaagccaaggccctctcctcc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactagacccatgtagccctgagcaaactcagatctgctcaagccaaggccctctcctcc 620

                                                                       
Query: 420 atgcagccaatgccatcgcctccgcttttcccatactgggcagtgaaccatgtggctctg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgcagccaatgccatcgcctccgcttttcccatactgggcagtgaaccatgtggctctg 680

                                                                       
Query: 480 atggccagggacctctctgagcctcggtttcttcatccataaaattttacaccctggagc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atggccagggacctctctgagcctcggtttcttcatccataaaattttacaccctggagc 740

                                           
Query: 540 ttagcgggaggaatgcacgctgaattatgagt 571
           ||||||||||||||||||||||||||||||||
Sbjct: 741 ttagcgggaggaatgcacgctgaattatgagt 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 972
Length adjustment: 10
Effective length of query: 561
Effective length of database: 962
Effective search space:   539682
Effective search space used:   539682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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