BAC Information

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BAC

Clone NameMSMg01-261H03
Chromosome3 (Build37)
Map Location 89,569,126 - 89,569,536
singlet/doubletsinglet
Overlap genenone
Upstream geneSyt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2
Downstream geneUbe2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261H03.T7 (MSMg01no261_h03.b1)MSMg01-261H03.TJ (MSMg01no261_h03.g1)
ACCAG403830AG403831
length758780
length of high quality
(start - end)		416 (43 - 458)183 (76 - 258)
definitionCHROMAT_FILE: MSMg01no261_h03.b1 PHD_FILE: MSMg01no261_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:50 2005CHROMAT_FILE: MSMg01no261_h03.g1 PHD_FILE: MSMg01no261_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCCTGAAAATTTCCAGTTTAAGTAAAAGGTAGGTAGGGGCACTGGG
GTGATAAAAGAGCTGGAGGGAACTCCCTGTTTAAAAGACCGAGGGCTAGG
AGGGGTTAAATAGTCAAGGATCTTAAAGACGTCGTCAATAGCTAGAATGT
GGAGCTGAGACAGGCATTGACGAGATGAAGCGAAGCCTTTTGTCTGCTAA
GTCTGCTTCAGACAGAAATCTTTTTGGTTGAAAGTGACCACTGATCCACT
AAGAAAAAAAAGAGGTCCTTTATGGGCTCAGTAGCTAAAAGTTCAGGGCT
TTCAAGATCAAAGATGTCATTGAGTTTTGACACCTCTCTCATCTTTGCTC
TCTTTGTGTTAGCTTCATTCTTTCTGTGAAATGGTCCCCTGATCTCCCCA
GAACACAGCGTGCAAGGAACCATTGATATTGGTTGTTTATGCAGATCTCA
GAACTTTCTAGGCCACCTTCTTTTCAGGAGGTCTAGACCTATCTAGCTTA
GATTCCCCAGGAGAATGGCAAGATCTTGGCCTTGTCTGAGCTTATGGAAG
TAGAGTAAGAGGCTTGGTGATTAGACCCTCTTTCTCAGAATTCCGGCAGA
TATTTGCCTTTTCTTAATTTAGACAGTTATCCCTGCTGCCTTACTAAAAA
ATTTTTTGATCCCAGGTTCTTTAATGCGTTTAATTTCTTCAGCCTATACC
TCTTTAGC

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTATCCTCGA
ACTCAGAGAGATCCACCTGCCTCAGCCTCCCAAGTGCTGGGATTAAAGGC
ATAGGACACCAATGCCCAGTTCCAACCTACATTCTTGTTCTGTTGGTGAT
TGGTGAAGCTCTGAGGCAGGAGCAGAGAGGAACAATGGGTATTGTTCAAT
GCCATTGGGCAATGGGCAATGGGCAATGGGCAATGTGCGTCACTTGAGAT
GGCAATGGACGTGACTGGAGGAAAGTAGTTTGTAGCTTGTCTCCAGGATG
AGGCTCATCAAGGAAGCCCCCATGCTGAGCTGAGTTGAGCTTATCCCAAA
AGAGCTTACTACTGTGGCTTGAAACTGTGGTGCTAGCGTTGGGGTCTTCG
ATGAATCACACACTCCACTGCGGACCTTGCACAATCATAGTTGGTAATTC
TGACAATAAAGTAAGCACTTCTAGATATAGTTATTTTATTCTCATGATAA
ATTTGAGTTTATCCTGTAACTAACCCCACCGGCGCCCCCATACTCATCCC
ATACTTTTCAACTTTATCTCTCCTTTCCTTATATACCCTTCTTTTCCCTG
CCTAGCTTGTTACTTTACTTGTAATAACTCATTTTACCTGCTTTATAAGC
TCTGTGTCTATTTTCACCTGCTTCTGTACACTTGACCCTGCTCCTCGCAC
CCCCTACCTGGTTATTTTTTTTTAATTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_h03.b1 MSMg01no261_h03.b1 CHROMAT_FILE:
MSMg01no261_h03.b1 PHD_FILE: MSMg01no261_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:50 2005
         (416 letters)



>mm_chr3_89568919_89569736
          Length = 818

 Score =  741 bits (383), Expect = 0.0
 Identities = 404/413 (97%), Gaps = 6/413 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   ggaattcctgaaaa---tttccagtttaagtaaaaggtaggtaggggcactggggtgata 64
           ||||||||||||||     || ||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ggaattcctgaaaacac--tcaagtttaagtaaaaggtaggtaggggcactggggtgata 561

                                                                       
Query: 65  aaagagctggagggaactccctgtttaaaagaccgagggctaggaggggttaaatagtca 124
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaagagctggagggaactacatgtttaaaagaccgagggctaggaggggttaaatagtca 501

                                                                       
Query: 125 aggatcttaaagacgtcgtcaatagctagaatgtggagctgagacaggcattgacgagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aggatcttaaagacgtcgtcaatagctagaatgtggagctgagacaggcattgacgagat 441

                                                                       
Query: 185 gaagcgaagccttttgtctgctaagtctgcttcagacagaaatctttttggttgaaagtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaagcgaagccttttgtctgctaagtctgcttcagacagaaatctttttggttgaaagtg 381

                                                                       
Query: 245 accactgatccactaag-aaaaaaaagaggtcctttatgggctcagtagctaaaagttca 303
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 accactgatccactaagaaaaaaaaagaggtcctttatgggctcagtagctaaaagttca 321

                                                                       
Query: 304 gggctttcaagatcaaagatgtcattgagttttgacacctctctcatctttgctctcttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gggctttcaagatcaaagatgtcattgagttttgacacctctctcatctttgctctcttt 261

                                                                
Query: 364 gtgttagcttcattctttctgtgaaatggtcccctgatctccccagaacacag 416
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtgttagcttcattctttctgtgaaatggtcccctgatctccccagaacacag 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 818
Length adjustment: 9
Effective length of query: 407
Effective length of database: 809
Effective search space:   329263
Effective search space used:   329263
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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